Variant report

Variant	rs17231026
Chromosome Location	chr8:59811770-59811771
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10504268	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16924195	0.88[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16924208	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17232203	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17233300	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17296738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2218684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62508361	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62508363	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72649495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72651303	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72651304	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
5	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
6	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:59808600-59815200	Weak transcription	Osteobl	bone
10	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
11	chr8:59809800-59811800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:59810200-59814800	Weak transcription	Brain Germinal Matrix	brain
13	chr8:59810400-59813200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:59810600-59811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:59810600-59812000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:59810600-59812400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:59810600-59812400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59810800-59811800	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:59810800-59811800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr8:59810800-59811800	Strong transcription	Dnd41	blood
21	chr8:59810800-59811800	Enhancers	HUVEC	blood vessel
22	chr8:59811000-59811800	Enhancers	Primary hematopoietic stem cells	blood
23	chr8:59811000-59811800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:59811000-59811800	Enhancers	NHDF-Ad	bronchial
25	chr8:59811000-59812000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr8:59811000-59812600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr8:59811200-59811800	Enhancers	Stomach Smooth Muscle	stomach
28	chr8:59811400-59811800	Strong transcription	Fetal Thymus	thymus
29	chr8:59811400-59812000	Enhancers	Primary T cells from cord blood	blood
30	chr8:59811400-59812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:59811400-59813400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr8:59811400-59813800	Weak transcription	Fetal Brain Male	brain
33	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:59811600-59812800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:59811600-59813800	Weak transcription	Fetal Brain Female	brain
36	chr8:59811600-59815200	Weak transcription	Fetal Lung	lung
37	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood

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