Variant report

Variant	rs10505015
Chromosome Location	chr8:102898649-102898650
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102895916..102899783-chr8:102900314..102903177,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11986127	1.00[CEU][hapmap]
rs11996557	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16868691	1.00[CEU][hapmap]
rs16868707	1.00[CEU][hapmap]
rs16868711	1.00[CEU][hapmap]
rs16868715	1.00[CEU][hapmap]
rs16868730	1.00[CEU][hapmap]
rs16868739	1.00[CEU][hapmap]
rs16868741	1.00[CEU][hapmap]
rs59747937	1.00[EUR][1000 genomes]
rs7005622	1.00[CEU][hapmap]
rs73696539	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696577	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102885400-102900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:102888800-102901000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:102894400-102901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:102896400-102899400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:102896400-102914800	Weak transcription	Right Ventricle	heart
6	chr8:102896600-102899200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:102896600-102900000	Weak transcription	K562	blood
8	chr8:102897000-102898800	Enhancers	Stomach Mucosa	stomach
9	chr8:102897400-102899600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:102897600-102898800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:102897600-102898800	Enhancers	Small Intestine	intestine
12	chr8:102897600-102899600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:102897600-102899600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:102897600-102899600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:102897600-102899800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:102897600-102903600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:102897800-102898800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr8:102897800-102899200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:102897800-102900400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:102898000-102898800	Enhancers	NHEK	skin
21	chr8:102898000-102899000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:102898000-102899200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr8:102898000-102899200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr8:102898000-102899200	Weak transcription	Left Ventricle	heart
25	chr8:102898000-102899400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:102898000-102900200	Weak transcription	Psoas Muscle	Psoas
27	chr8:102898000-102900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:102898000-102901400	Weak transcription	Right Atrium	heart
29	chr8:102898000-102914600	Weak transcription	Ovary	ovary
30	chr8:102898200-102898800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:102898200-102899200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:102898200-102899600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr8:102898200-102899800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr8:102898200-102899800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr8:102898400-102899600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr8:102898400-102902600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:102898600-102898800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr8:102898600-102899000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:102898600-102899600	Enhancers	Primary T cells from cord blood	blood
40	chr8:102898600-102899800	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links