Variant report

Variant	rs11986127
Chromosome Location	chr8:102942824-102942825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102942428..102944500-chr8:102955135..102957986,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10505015	1.00[CEU][hapmap]
rs11996557	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11997578	0.94[EUR][1000 genomes]
rs11997754	1.00[EUR][1000 genomes]
rs16868691	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868707	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868710	1.00[EUR][1000 genomes]
rs16868711	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868715	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868730	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868739	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868741	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs34561956	1.00[EUR][1000 genomes]
rs35690650	1.00[EUR][1000 genomes]
rs55754486	0.94[EUR][1000 genomes]
rs55824424	0.88[EUR][1000 genomes]
rs55897683	1.00[EUR][1000 genomes]
rs55939093	0.94[EUR][1000 genomes]
rs56047034	0.88[EUR][1000 genomes]
rs57350304	0.94[EUR][1000 genomes]
rs58938702	1.00[EUR][1000 genomes]
rs59217267	0.94[EUR][1000 genomes]
rs59278862	0.94[EUR][1000 genomes]
rs59332201	0.94[EUR][1000 genomes]
rs61185137	1.00[EUR][1000 genomes]
rs61383411	0.94[EUR][1000 genomes]
rs7005622	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs73280871	0.94[EUR][1000 genomes]
rs73280876	0.94[EUR][1000 genomes]
rs73280878	0.94[EUR][1000 genomes]
rs73280879	0.94[EUR][1000 genomes]
rs73280880	0.94[EUR][1000 genomes]
rs73280885	0.94[EUR][1000 genomes]
rs73280888	0.94[EUR][1000 genomes]
rs73280891	0.94[EUR][1000 genomes]
rs73280899	1.00[EUR][1000 genomes]
rs73282603	1.00[EUR][1000 genomes]
rs73282609	1.00[EUR][1000 genomes]
rs73282612	1.00[EUR][1000 genomes]
rs73282613	1.00[EUR][1000 genomes]
rs73282614	1.00[EUR][1000 genomes]
rs73282618	1.00[EUR][1000 genomes]
rs73282620	1.00[EUR][1000 genomes]
rs73290530	1.00[EUR][1000 genomes]
rs73696550	0.94[EUR][1000 genomes]
rs73696551	0.94[EUR][1000 genomes]
rs73696560	1.00[EUR][1000 genomes]
rs73696564	1.00[EUR][1000 genomes]
rs73696586	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816729	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102937600-102943000	Weak transcription	Fetal Brain Female	brain
3	chr8:102937800-102943000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:102939000-102944200	Weak transcription	Esophagus	oesophagus
5	chr8:102939800-102944200	Weak transcription	Lung	lung
6	chr8:102942600-102943200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:102942600-102943400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:102942600-102943400	Enhancers	Fetal Muscle Trunk	muscle
9	chr8:102942600-102943600	Enhancers	NH-A	brain
10	chr8:102942600-102943800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:102942600-102944400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:102942600-102944400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr8:102942600-102944600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:102942600-102944600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:102942600-102944600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:102942600-102944600	Enhancers	Ovary	ovary
17	chr8:102942600-102944600	Enhancers	Psoas Muscle	Psoas
18	chr8:102942600-102944600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr8:102942600-102944800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:102942800-102943000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr8:102942800-102943000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr8:102942800-102943000	Enhancers	HSMMtube	muscle
23	chr8:102942800-102943200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:102942800-102943400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:102942800-102943400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:102942800-102943400	Enhancers	Right Atrium	heart
27	chr8:102942800-102943400	Enhancers	Right Ventricle	heart
28	chr8:102942800-102943600	Enhancers	K562	blood
29	chr8:102942800-102943800	Enhancers	Aorta	Aorta
30	chr8:102942800-102944400	Enhancers	Stomach Smooth Muscle	stomach
31	chr8:102942800-102944600	Enhancers	Left Ventricle	heart
32	chr8:102942800-102947200	Enhancers	Fetal Heart	heart

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