Variant report

Variant	rs73696560
Chromosome Location	chr8:102918650-102918651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102916207..102919330-chr8:102919877..102923677,3	MCF-7	breast:
2	chr8:102504416..102506326-chr8:102917856..102920529,2	MCF-7	breast:
3	chr8:102918268..102920256-chr8:102922072..102924621,2	K562	blood:
4	chr8:102915036..102919130-chr8:102919959..102923677,4	MCF-7	breast:
5	chr8:102916266..102919129-chr8:102925767..102928340,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11986127	1.00[EUR][1000 genomes]
rs11996557	0.94[EUR][1000 genomes]
rs11997578	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997754	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868739	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868741	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55754486	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824424	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55939093	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047034	0.88[EUR][1000 genomes]
rs57350304	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58938702	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59217267	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59278862	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332201	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61383411	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005622	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280871	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280876	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280878	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280879	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280880	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280885	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280888	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280891	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280899	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282612	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282613	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282618	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290530	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696550	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696551	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696564	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696586	1.00[EUR][1000 genomes]
rs7816729	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102910200-102919800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:102915200-102938800	Weak transcription	Aorta	Aorta
3	chr8:102915400-102919400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:102915400-102919400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:102915400-102919800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:102915400-102919800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:102915400-102920000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:102915400-102920200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr8:102915400-102920800	Enhancers	Fetal Muscle Leg	muscle
10	chr8:102915400-102921200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:102916000-102920000	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:102916000-102920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:102916000-102920400	Weak transcription	Fetal Stomach	stomach
14	chr8:102916200-102919800	Weak transcription	Psoas Muscle	Psoas
15	chr8:102916200-102919800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:102916200-102920000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:102916200-102920000	Enhancers	GM12878-XiMat	blood
18	chr8:102916200-102920200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:102916200-102932200	Weak transcription	Lung	lung
20	chr8:102916200-102942600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:102916400-102920000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:102916400-102920000	Weak transcription	HMEC	breast
23	chr8:102916400-102920200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr8:102916600-102919800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:102916600-102920000	Weak transcription	Fetal Heart	heart
26	chr8:102917600-102919000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:102917800-102919400	Enhancers	NHDF-Ad	bronchial
28	chr8:102918000-102918800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:102918200-102919000	Enhancers	NH-A	brain
30	chr8:102918400-102921200	Enhancers	Ovary	ovary
31	chr8:102918400-102921200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr8:102918600-102918800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr8:102918600-102919000	Enhancers	Fetal Muscle Trunk	muscle
34	chr8:102918600-102919200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr8:102918600-102919200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:102918600-102921400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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