Variant report

Variant	rs55754486
Chromosome Location	chr8:102903308-102903309
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11986127	0.94[EUR][1000 genomes]
rs11996557	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997754	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868691	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868707	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868710	0.94[EUR][1000 genomes]
rs16868711	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868715	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868730	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868739	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868741	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561956	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690650	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824424	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897683	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55939093	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047034	0.94[EUR][1000 genomes]
rs57350304	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58938702	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59217267	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59278862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61383411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005622	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280899	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282603	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282609	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282612	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282613	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282614	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282618	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282620	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290530	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696560	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696564	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696586	0.94[EUR][1000 genomes]
rs7816729	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102896400-102914800	Weak transcription	Right Ventricle	heart
2	chr8:102897600-102903600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:102898000-102914600	Weak transcription	Ovary	ovary
4	chr8:102899600-102904600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:102899600-102914600	Weak transcription	Left Ventricle	heart
6	chr8:102899800-102904000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:102900000-102903400	Enhancers	K562	blood
8	chr8:102901400-102904000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:102901600-102903800	Weak transcription	Stomach Mucosa	stomach
10	chr8:102901800-102903800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:102902200-102903400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:102902200-102903600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:102902200-102905000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:102902400-102910000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:102902600-102903800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:102902600-102904000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:102902600-102904200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:102902800-102903800	Enhancers	HMEC	breast
19	chr8:102902800-102904000	Weak transcription	Psoas Muscle	Psoas
20	chr8:102902800-102904200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr8:102903000-102903400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr8:102903000-102904000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr8:102903000-102910000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:102903200-102903400	Enhancers	NHEK	skin
25	chr8:102903200-102903600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:102903200-102903800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:102903200-102904000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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