Variant report

Variant	rs61383411
Chromosome Location	chr8:102915910-102915911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102915036..102919130-chr8:102919959..102923677,4	MCF-7	breast:
2	chr8:102912593..102916375-chr8:102916443..102918583,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11986127	0.94[EUR][1000 genomes]
rs11996557	1.00[EUR][1000 genomes]
rs11997578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997754	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868691	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868707	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868710	0.94[EUR][1000 genomes]
rs16868711	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868715	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868730	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868739	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868741	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561956	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690650	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55754486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824424	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897683	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55939093	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047034	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs57350304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58938702	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59182464	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs59217267	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59278862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308131	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs7005622	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280876	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280885	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280899	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282603	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282609	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282612	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282613	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282614	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282618	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282620	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290530	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696550	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696551	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696560	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696564	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696586	0.94[EUR][1000 genomes]
rs7816729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102910200-102916000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:102910200-102919800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:102914000-102916200	Enhancers	Lung	lung
4	chr8:102914200-102916400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:102914200-102916400	Enhancers	HMEC	breast
6	chr8:102914200-102916600	Enhancers	Fetal Heart	heart
7	chr8:102914600-102916000	Enhancers	Left Ventricle	heart
8	chr8:102914600-102916000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:102914600-102916000	Enhancers	Spleen	Spleen
10	chr8:102914600-102916200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:102914600-102916200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:102914800-102916000	Enhancers	Fetal Stomach	stomach
13	chr8:102914800-102916400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr8:102914800-102918000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:102915000-102917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:102915200-102916000	Enhancers	Primary hematopoietic stem cells	blood
17	chr8:102915200-102916000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr8:102915200-102916000	Enhancers	Colon Smooth Muscle	Colon
19	chr8:102915200-102916200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr8:102915200-102916400	Enhancers	HSMMtube	muscle
21	chr8:102915200-102938800	Weak transcription	Aorta	Aorta
22	chr8:102915400-102916000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:102915400-102916000	Enhancers	Fetal Muscle Trunk	muscle
24	chr8:102915400-102916000	Enhancers	Right Ventricle	heart
25	chr8:102915400-102916000	Enhancers	K562	blood
26	chr8:102915400-102916200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:102915400-102916200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr8:102915400-102916200	Enhancers	Psoas Muscle	Psoas
29	chr8:102915400-102916200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr8:102915400-102916200	Enhancers	Right Atrium	heart
31	chr8:102915400-102916200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr8:102915400-102916200	Enhancers	Stomach Smooth Muscle	stomach
33	chr8:102915400-102916400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr8:102915400-102916400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:102915400-102916400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:102915400-102916400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr8:102915400-102916400	Enhancers	Ovary	ovary
38	chr8:102915400-102916400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr8:102915400-102916400	Enhancers	NHDF-Ad	bronchial
40	chr8:102915400-102916800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:102915400-102916800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr8:102915400-102919400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr8:102915400-102919400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:102915400-102919800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:102915400-102919800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr8:102915400-102920000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr8:102915400-102920200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr8:102915400-102920800	Enhancers	Fetal Muscle Leg	muscle
49	chr8:102915400-102921200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr8:102915600-102916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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