Variant report

Variant	rs7005622
Chromosome Location	chr8:102902078-102902079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102895916..102899783-chr8:102900314..102903177,4	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10505015	1.00[CEU][hapmap]
rs11986127	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11996557	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11997578	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997754	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868691	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868707	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868710	0.94[EUR][1000 genomes]
rs16868711	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868730	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868739	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868741	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561956	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690650	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55754486	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824424	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897683	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55939093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047034	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57350304	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58938702	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59182464	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59217267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59278862	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332201	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308131	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61383411	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280871	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280876	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280878	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280879	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280880	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280885	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280888	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280891	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280899	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282603	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282609	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282612	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282613	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282614	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282618	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282620	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290530	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696550	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696551	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696560	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696564	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696586	0.94[EUR][1000 genomes]
rs7816729	1.00[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102896400-102914800	Weak transcription	Right Ventricle	heart
2	chr8:102897600-102903600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:102898000-102914600	Weak transcription	Ovary	ovary
4	chr8:102898400-102902600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:102898800-102902600	Weak transcription	Small Intestine	intestine
6	chr8:102898800-102903200	Weak transcription	NHEK	skin
7	chr8:102899000-102903000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:102899600-102902800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:102899600-102903200	Weak transcription	Primary T cells from cord blood	blood
10	chr8:102899600-102904600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:102899600-102914600	Weak transcription	Left Ventricle	heart
12	chr8:102899800-102902600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr8:102899800-102904000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:102900000-102903400	Enhancers	K562	blood
15	chr8:102900200-102902800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:102900400-102902200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:102900800-102903200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:102901000-102902200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:102901000-102902200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:102901000-102902200	Enhancers	Fetal Heart	heart
21	chr8:102901000-102902400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:102901000-102902600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:102901000-102902600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr8:102901000-102902800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:102901000-102902800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr8:102901200-102902200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:102901400-102904000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:102901600-102902600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr8:102901600-102902600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:102901600-102902600	Weak transcription	Psoas Muscle	Psoas
31	chr8:102901600-102903800	Weak transcription	Stomach Mucosa	stomach
32	chr8:102901800-102903800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:102902000-102902800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:102902000-102903000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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