Variant report

Variant	rs10505401
Chromosome Location	chr8:122450476-122450477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122450417..122452723-chr8:122453987..122455592,2	K562	blood:
2	chr8:122443838..122446370-chr8:122448099..122450966,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10094084	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10107573	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10481070	0.91[ASN][1000 genomes]
rs10481147	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956033	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10956035	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10956038	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10956039	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10956040	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11993674	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545486	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13265234	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13265478	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13267289	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13269889	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1386442	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1487158	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1487162	0.82[ASN][1000 genomes]
rs1487170	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1906216	0.80[ASN][1000 genomes]
rs2046570	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2385927	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2386122	0.80[ASN][1000 genomes]
rs2891939	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4144692	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4282581	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871187	0.93[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs6469998	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6470000	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985415	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6988724	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7000174	0.82[ASN][1000 genomes]
rs7004666	0.85[ASN][1000 genomes]
rs7006642	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7006650	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7008446	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7008769	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7015873	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7017097	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73332335	0.98[ASN][1000 genomes]
rs7824421	0.90[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7824450	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7829217	0.83[ASN][1000 genomes]
rs7832671	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7838314	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7846340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643156	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs982818	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv465793	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv612132	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv891427	chr8:122411349-122472297	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv527877	chr8:122426082-122472297	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv3334626	chr8:122450471-122452869	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122448400-122450800	Enhancers	Fetal Muscle Leg	muscle
2	chr8:122449200-122450600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:122449400-122450600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:122450200-122451200	Enhancers	NH-A	brain
5	chr8:122450400-122451200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:122450400-122451200	Enhancers	Osteobl	bone

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