Variant report

Variant	rs9643156
Chromosome Location	chr8:122442971-122442972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122439583..122442142-chr8:122442320..122444003,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10094084	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10107573	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10481070	0.91[ASN][1000 genomes]
rs10481147	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10505401	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956033	0.83[ASN][1000 genomes]
rs10956035	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956038	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956039	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956040	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11993674	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545486	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13265234	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13265478	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13267289	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269889	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1386442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487162	0.83[ASN][1000 genomes]
rs1487170	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1906216	0.81[ASN][1000 genomes]
rs2046570	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2385927	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386122	0.81[ASN][1000 genomes]
rs2891939	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4144692	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282581	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4460379	0.80[ASN][1000 genomes]
rs6469998	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6470000	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985415	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6988724	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7000174	0.83[ASN][1000 genomes]
rs7004666	0.86[ASN][1000 genomes]
rs7006642	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7006650	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7008446	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7008769	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7015873	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7017097	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73332335	0.97[ASN][1000 genomes]
rs7824421	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7824450	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7829217	0.83[ASN][1000 genomes]
rs7832671	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7838314	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7846340	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv465793	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv612132	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv1847136	chr8:122411349-122445322	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv891427	chr8:122411349-122472297	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv525416	chr8:122425336-122445322	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv527877	chr8:122426082-122472297	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122440000-122443800	Weak transcription	Fetal Lung	lung
2	chr8:122440200-122443400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:122442200-122443400	Weak transcription	HepG2	liver
4	chr8:122442200-122444000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:122442200-122444800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:122442400-122444200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:122442600-122443800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:122442800-122443600	Weak transcription	Fetal Stomach	stomach

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