Variant report

Variant	rs7004666
Chromosome Location	chr8:122411782-122411783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10094084	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10102395	0.83[ASN][1000 genomes]
rs10107573	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10481070	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10481147	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10505401	0.85[ASN][1000 genomes]
rs10956033	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10956035	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10956038	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10956039	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10956040	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11993674	0.86[ASN][1000 genomes]
rs12545486	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13265234	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13265478	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13267289	0.86[ASN][1000 genomes]
rs13269889	0.86[ASN][1000 genomes]
rs13274258	0.89[ASN][1000 genomes]
rs1386442	0.86[ASN][1000 genomes]
rs1487158	0.86[ASN][1000 genomes]
rs1487162	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1487168	0.89[ASN][1000 genomes]
rs1487169	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1487170	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1565035	0.89[ASN][1000 genomes]
rs1843789	0.89[ASN][1000 genomes]
rs1843790	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1906216	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2046570	0.92[ASN][1000 genomes]
rs2385927	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2386122	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2891939	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4144692	0.92[ASN][1000 genomes]
rs4282581	0.85[ASN][1000 genomes]
rs4460379	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6469998	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6470000	0.89[ASN][1000 genomes]
rs6985415	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6988724	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7000174	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7006642	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7006650	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7008446	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7008769	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7015873	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7017097	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73332335	0.85[ASN][1000 genomes]
rs7824421	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7824450	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7829217	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7832671	0.81[ASN][1000 genomes]
rs7838314	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7846340	0.86[ASN][1000 genomes]
rs9643156	0.86[ASN][1000 genomes]
rs982818	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1808330	chr8:122385614-122415509	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2755780	chr8:122393819-122426819	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1027842	chr8:122394235-122427343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv10312	chr8:122400708-122430090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018781	chr8:122403995-122438697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029597	chr8:122403995-122440174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2761213	chr8:122404007-122427355	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2421507	chr8:122404007-122429586	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv520758	chr8:122405097-122427672	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3693008	chr8:122405097-122429586	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv465793	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv612132	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv442121	chr8:122405182-122427355	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv515062	chr8:122405435-122422419	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv819192	chr8:122410661-122416515	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1847136	chr8:122411349-122445322	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv891427	chr8:122411349-122472297	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122406800-122417400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr8:122410000-122412200	Enhancers	Osteobl	bone
3	chr8:122411000-122411800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:122411000-122412600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:122411000-122415600	Weak transcription	NHDF-Ad	bronchial
6	chr8:122411000-122416000	Weak transcription	Stomach Mucosa	stomach
7	chr8:122411400-122412000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:122411400-122417600	Weak transcription	NHLF	lung

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