Variant report

Variant	rs10505542
Chromosome Location	chr8:130547253-130547254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130542173..130544704-chr8:130545389..130548489,3	K562	blood:
2	chr8:130547187..130549889-chr8:130563626..130566277,3	K562	blood:
3	chr8:128747254..128749226-chr8:130546738..130548989,2	MCF-7	breast:
4	chr8:130546472..130548166-chr8:130548842..130551608,2	MCF-7	breast:
5	chr8:130301513..130304435-chr8:130546554..130548650,2	K562	blood:
6	chr8:130432582..130435209-chr8:130544896..130547721,2	K562	blood:
7	chr8:130462678..130464260-chr8:130546680..130548595,2	MCF-7	breast:
8	chr8:128877443..128879412-chr8:130546084..130548123,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10505541	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11774619	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11786259	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904080	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs17262815	1.00[CHB][hapmap]
rs2196074	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35574031	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66791054	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714284	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714286	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714289	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72714290	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7812646	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs919702	1.00[CHB][hapmap];0.87[CHD][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130539600-130547800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130541600-130549600	Weak transcription	Right Atrium	heart
3	chr8:130542200-130547600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:130544400-130548600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:130545400-130547600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:130546000-130547400	Strong transcription	K562	blood
7	chr8:130546200-130547800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:130546200-130551800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:130546600-130548000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:130546600-130549200	Enhancers	Fetal Thymus	thymus
11	chr8:130546600-130551000	Enhancers	Dnd41	blood
12	chr8:130547200-130549000	Enhancers	Fetal Muscle Leg	muscle
13	chr8:130547200-130550000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:130547200-130551800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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