Variant report

Variant	rs2196074
Chromosome Location	chr8:130526245-130526246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130520024..130525389-chr8:130526059..130531772,7	K562	blood:
2	chr8:130511733..130514870-chr8:130523841..130528014,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10505541	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10505542	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11774619	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786259	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17262815	0.84[CEU][hapmap]
rs35574031	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66791054	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714284	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714286	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714289	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714290	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7812646	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839438	0.85[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130521200-130526600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:130521400-130526400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:130521400-130526400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:130521400-130526400	Weak transcription	HSMM	muscle
5	chr8:130521400-130526400	Weak transcription	Osteobl	bone
6	chr8:130521400-130526600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:130523800-130527000	Enhancers	Fetal Intestine Small	intestine
8	chr8:130523800-130528000	Enhancers	Fetal Intestine Large	intestine
9	chr8:130524200-130526400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:130524200-130527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:130524600-130526400	Weak transcription	Dnd41	blood
12	chr8:130525400-130527000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:130525400-130527600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:130525400-130527600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:130525400-130528800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:130525600-130527000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:130525600-130527400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:130525800-130527400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:130526000-130527200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:130526000-130527600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr8:130526000-130528600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:130526000-130528600	Enhancers	NHEK	skin
23	chr8:130526200-130526800	Genic enhancers	K562	blood
24	chr8:130526200-130527000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr8:130526200-130527000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr8:130526200-130527400	Enhancers	Fetal Heart	heart
27	chr8:130526200-130528400	Enhancers	NH-A	brain
28	chr8:130526200-130528600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr8:130526200-130528600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:130526200-130528600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:130526200-130528600	Enhancers	HMEC	breast
32	chr8:130526200-130528800	Enhancers	HSMMtube	muscle
33	chr8:130526200-130529000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:130526200-130529200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links