Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10220095	1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12016712	0.80[ASN][1000 genomes]
rs13378547	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1413072	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1413073	0.80[ASN][1000 genomes]
rs1413074	0.80[ASN][1000 genomes]
rs1413075	0.80[ASN][1000 genomes]
rs17069824	0.87[EUR][1000 genomes]
rs2065563	0.80[ASN][1000 genomes]
rs6561365	0.80[ASN][1000 genomes]
rs6561366	0.80[ASN][1000 genomes]
rs7320763	0.80[ASN][1000 genomes]
rs7330865	0.80[ASN][1000 genomes]
rs8000212	0.80[ASN][1000 genomes]
rs8001433	0.80[ASN][1000 genomes]
rs9316288	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316289	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316290	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9591026	0.80[ASN][1000 genomes]
rs9591027	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9591028	0.80[ASN][1000 genomes]
rs9591029	0.80[ASN][1000 genomes]
rs9591032	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9595632	0.84[EUR][1000 genomes]
rs9595636	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9595637	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9595638	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9595643	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761787	chr13:47900036-47908763	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10507554	C7orf23	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47900800-47904400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:47901000-47906200	Weak transcription	NHDF-Ad	bronchial
3	chr13:47901200-47903000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:47901800-47902000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:47901800-47905400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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