Variant report
| Variant | rs9595636 |
|---|---|
| Chromosome Location | chr13:47853505-47853506 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10507554 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12016712 | 0.83[ASN][1000 genomes] |
| rs1413072 | 0.86[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1413073 | 0.83[ASN][1000 genomes] |
| rs1413074 | 0.83[ASN][1000 genomes] |
| rs1413075 | 0.83[ASN][1000 genomes] |
| rs17069824 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2065563 | 0.83[ASN][1000 genomes] |
| rs6561365 | 0.83[ASN][1000 genomes] |
| rs6561366 | 0.83[ASN][1000 genomes] |
| rs7320763 | 0.83[ASN][1000 genomes] |
| rs7330865 | 0.83[ASN][1000 genomes] |
| rs8000212 | 0.83[ASN][1000 genomes] |
| rs8001433 | 0.83[ASN][1000 genomes] |
| rs9316273 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9316288 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9316289 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9591015 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9591018 | 0.93[ASN][1000 genomes] |
| rs9591026 | 0.83[ASN][1000 genomes] |
| rs9591027 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9591028 | 0.83[ASN][1000 genomes] |
| rs9591029 | 0.83[ASN][1000 genomes] |
| rs9591032 | 0.93[EUR][1000 genomes] |
| rs9595632 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9595633 | 0.93[ASN][1000 genomes] |
| rs9595637 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9595638 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9595643 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763019 | chr13:47348229-48123447 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv3394678 | chr13:47678184-48039379 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv832599 | chr13:47703075-47873855 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1046560 | chr13:47826023-47854425 | Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:47853400-47854800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
