Variant report

Variant	rs17069824
Chromosome Location	chr13:47854082-47854083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10220095	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10507554	0.87[EUR][1000 genomes]
rs12016712	0.83[ASN][1000 genomes]
rs13378547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1413072	0.86[ASN][1000 genomes]
rs1413073	0.83[ASN][1000 genomes]
rs1413074	0.83[ASN][1000 genomes]
rs1413075	0.83[ASN][1000 genomes]
rs2065563	0.83[ASN][1000 genomes]
rs6561365	0.83[ASN][1000 genomes]
rs6561366	0.83[ASN][1000 genomes]
rs7320763	0.83[ASN][1000 genomes]
rs7330865	0.83[ASN][1000 genomes]
rs8000212	0.83[ASN][1000 genomes]
rs8001433	0.83[ASN][1000 genomes]
rs9316273	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316288	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9316289	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9316290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9591015	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9591018	0.93[ASN][1000 genomes]
rs9591026	0.83[ASN][1000 genomes]
rs9591027	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9591028	0.83[ASN][1000 genomes]
rs9591029	0.83[ASN][1000 genomes]
rs9591032	0.93[EUR][1000 genomes]
rs9595632	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9595633	0.93[ASN][1000 genomes]
rs9595636	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9595637	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9595638	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9595643	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832599	chr13:47703075-47873855	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1046560	chr13:47826023-47854425	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47853400-47854800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:47853600-47854800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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