Variant report

Variant	rs10507831
Chromosome Location	chr13:76182100-76182101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76177950..76180812-chr13:76181762..76184474,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118939	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11840829	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11841846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11842057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17064713	1.00[AMR][1000 genomes]
rs36121666	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56383676	1.00[AMR][1000 genomes]
rs56864940	1.00[AMR][1000 genomes]
rs59248213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60083157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61472085	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094443	1.00[AMR][1000 genomes]
rs74094444	1.00[AMR][1000 genomes]
rs74094447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094448	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094449	1.00[AMR][1000 genomes]
rs74094454	1.00[AMR][1000 genomes]
rs74094477	1.00[AMR][1000 genomes]
rs7982750	0.83[AMR][1000 genomes]
rs7986038	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8000362	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002355	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv900577	chr13:76132484-76207565	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76124600-76183000	Weak transcription	Small Intestine	intestine
2	chr13:76125000-76192800	Weak transcription	Brain Substantia Nigra	brain
3	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
4	chr13:76125400-76191000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:76144000-76192400	Weak transcription	NHLF	lung
6	chr13:76144200-76194400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:76148200-76192200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:76148200-76203000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:76148200-76209600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr13:76149800-76209600	Weak transcription	Lung	lung
11	chr13:76158400-76192200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:76158600-76182400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:76158600-76191400	Weak transcription	Fetal Intestine Small	intestine
14	chr13:76158600-76195200	Weak transcription	NHEK	skin
15	chr13:76159000-76194600	Weak transcription	HUVEC	blood vessel
16	chr13:76159000-76209600	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:76159200-76182600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:76159200-76186800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:76159200-76191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:76159400-76189800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:76159400-76201800	Weak transcription	Fetal Lung	lung
22	chr13:76160200-76184600	Weak transcription	Fetal Kidney	kidney
23	chr13:76162600-76183400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr13:76164400-76183000	Weak transcription	Hela-S3	cervix
25	chr13:76164600-76182600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr13:76164600-76192000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:76164600-76194600	Weak transcription	Aorta	Aorta
28	chr13:76164600-76209400	Weak transcription	Esophagus	oesophagus
29	chr13:76164800-76183800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr13:76165200-76209200	Weak transcription	Fetal Muscle Leg	muscle
31	chr13:76166000-76189800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr13:76166800-76202000	Weak transcription	Fetal Brain Female	brain
33	chr13:76169200-76182200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr13:76170800-76209600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr13:76172800-76183800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr13:76174600-76198200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr13:76174600-76201400	Weak transcription	Psoas Muscle	Psoas
38	chr13:76175800-76191000	Weak transcription	HSMMtube	muscle
39	chr13:76176400-76184600	Strong transcription	Osteobl	bone
40	chr13:76176800-76199400	Weak transcription	Placenta	Placenta
41	chr13:76177000-76184800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:76177600-76191000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr13:76177600-76191400	Weak transcription	Fetal Intestine Large	intestine
44	chr13:76177600-76209400	Weak transcription	Left Ventricle	heart
45	chr13:76177600-76209600	Weak transcription	Fetal Stomach	stomach
46	chr13:76179000-76189800	Weak transcription	NHDF-Ad	bronchial
47	chr13:76179800-76182600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr13:76180000-76209600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr13:76180200-76182200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr13:76180200-76182600	Weak transcription	Primary monocytes fromperipheralblood	blood

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