Variant report

Variant	rs8002355
Chromosome Location	chr13:76204142-76204143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD6-1	chr13:76203370-76204548	ENSG00000228444.1

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10507831	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11840829	0.83[AMR][1000 genomes]
rs11841846	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11842057	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17064713	0.83[AMR][1000 genomes]
rs36121666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56383676	0.83[AMR][1000 genomes]
rs56864940	0.83[AMR][1000 genomes]
rs59248213	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60083157	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61472085	0.83[AMR][1000 genomes]
rs74094443	0.83[AMR][1000 genomes]
rs74094444	0.83[AMR][1000 genomes]
rs74094447	0.83[AMR][1000 genomes]
rs74094448	0.83[AMR][1000 genomes]
rs74094449	0.83[AMR][1000 genomes]
rs74094454	0.83[AMR][1000 genomes]
rs74094477	0.83[AMR][1000 genomes]
rs7982750	1.00[AMR][1000 genomes]
rs7986038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8000362	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv900577	chr13:76132484-76207565	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
2	chr13:76148200-76209600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr13:76149800-76209600	Weak transcription	Lung	lung
4	chr13:76159000-76209600	Weak transcription	Brain Hippocampus Middle	brain
5	chr13:76164600-76209400	Weak transcription	Esophagus	oesophagus
6	chr13:76165200-76209200	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:76170800-76209600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr13:76177600-76209400	Weak transcription	Left Ventricle	heart
9	chr13:76177600-76209600	Weak transcription	Fetal Stomach	stomach
10	chr13:76180000-76209600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr13:76180800-76204600	Weak transcription	Dnd41	blood
12	chr13:76180800-76209200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr13:76180800-76209200	Weak transcription	Adipose Nuclei	Adipose
14	chr13:76180800-76209600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:76181000-76209400	Weak transcription	Fetal Thymus	thymus
16	chr13:76181000-76209600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr13:76181000-76209600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr13:76181200-76209400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:76181200-76209600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr13:76181600-76207400	Weak transcription	HMEC	breast
21	chr13:76182800-76209400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr13:76189600-76209400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr13:76190600-76209600	Weak transcription	Brain Angular Gyrus	brain
24	chr13:76192000-76209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:76192200-76209400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:76192600-76209600	Weak transcription	Fetal Intestine Small	intestine
27	chr13:76193400-76209400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr13:76196200-76207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:76197000-76209600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr13:76197800-76209600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr13:76198800-76209400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr13:76199800-76209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr13:76200000-76205800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:76200200-76208200	Weak transcription	Placenta	Placenta
35	chr13:76200200-76209400	Weak transcription	Primary T cells from cord blood	blood
36	chr13:76200200-76209400	Weak transcription	Aorta	Aorta
37	chr13:76200200-76209600	Weak transcription	Primary B cells from cord blood	blood
38	chr13:76200200-76209600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:76200200-76209600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr13:76200400-76209400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr13:76201400-76205600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:76201800-76207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr13:76202200-76204200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:76202400-76209400	Weak transcription	Fetal Lung	lung
45	chr13:76202800-76204200	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr13:76203200-76205800	Weak transcription	NHLF	lung
47	chr13:76203200-76209600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:76203400-76204200	Genic enhancers	NHDF-Ad	bronchial
49	chr13:76203400-76207600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr13:76203600-76204800	Strong transcription	HSMMtube	muscle

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