Variant report

Variant	rs17064713
Chromosome Location	chr13:76153404-76153405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76153049..76155664-chr13:76161169..76162949,2	K562	blood:
2	chr13:76152309..76155041-chr13:76158108..76159629,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10507831	1.00[AMR][1000 genomes]
rs11840829	1.00[AMR][1000 genomes]
rs11841846	1.00[AMR][1000 genomes]
rs11842057	1.00[AMR][1000 genomes]
rs36121666	0.83[AMR][1000 genomes]
rs56383676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56864940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59248213	1.00[AMR][1000 genomes]
rs60083157	1.00[AMR][1000 genomes]
rs61472085	1.00[AMR][1000 genomes]
rs74094443	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094444	1.00[AMR][1000 genomes]
rs74094447	1.00[AMR][1000 genomes]
rs74094448	1.00[AMR][1000 genomes]
rs74094449	1.00[AMR][1000 genomes]
rs74094454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094477	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7982750	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7986038	0.83[AMR][1000 genomes]
rs8000362	1.00[AMR][1000 genomes]
rs8002355	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv900565	chr13:76111280-76169347	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv900566	chr13:76123678-76153748	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900567	chr13:76123678-76156136	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900568	chr13:76123678-76159104	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv900569	chr13:76123678-76167433	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv900570	chr13:76123678-76176680	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv900572	chr13:76130761-76156136	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv900573	chr13:76130761-76159104	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv562347	chr13:76132240-76153415	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv900574	chr13:76132484-76156136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv900575	chr13:76132484-76159104	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv900576	chr13:76132484-76176680	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv900577	chr13:76132484-76207565	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
19	nsv900578	chr13:76136976-76167433	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76124600-76183000	Weak transcription	Small Intestine	intestine
2	chr13:76124800-76164000	Weak transcription	Spleen	Spleen
3	chr13:76124800-76167600	Weak transcription	Gastric	stomach
4	chr13:76124800-76170600	Weak transcription	Colonic Mucosa	Colon
5	chr13:76125000-76156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr13:76125000-76158000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:76125000-76192800	Weak transcription	Brain Substantia Nigra	brain
8	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
9	chr13:76125200-76173800	Weak transcription	Fetal Heart	heart
10	chr13:76125200-76177800	Weak transcription	Stomach Mucosa	stomach
11	chr13:76125400-76191000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:76125600-76158000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:76125600-76182000	Weak transcription	Fetal Brain Male	brain
14	chr13:76129400-76158000	Weak transcription	Fetal Kidney	kidney
15	chr13:76129400-76180400	Weak transcription	Thymus	Thymus
16	chr13:76129600-76157800	Weak transcription	Fetal Brain Female	brain
17	chr13:76129600-76158000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:76129600-76158000	Weak transcription	Esophagus	oesophagus
19	chr13:76129600-76164000	Weak transcription	Ovary	ovary
20	chr13:76130400-76164200	Weak transcription	K562	blood
21	chr13:76133000-76158000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr13:76133200-76158000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr13:76135400-76164000	Weak transcription	Pancreas	Pancrea
24	chr13:76140200-76158200	Weak transcription	NHDF-Ad	bronchial
25	chr13:76141600-76158000	Weak transcription	A549	lung
26	chr13:76141800-76178400	Weak transcription	HepG2	liver
27	chr13:76142200-76158600	Weak transcription	Fetal Lung	lung
28	chr13:76142200-76164000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr13:76144000-76192400	Weak transcription	NHLF	lung
30	chr13:76144200-76194400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr13:76144400-76176800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr13:76146800-76156200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr13:76147600-76158600	Weak transcription	Brain Hippocampus Middle	brain
34	chr13:76147800-76158200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr13:76148000-76154400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr13:76148000-76155400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr13:76148000-76156000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:76148000-76157800	Weak transcription	Hela-S3	cervix
39	chr13:76148000-76158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr13:76148000-76158000	Weak transcription	Aorta	Aorta
41	chr13:76148000-76158000	Weak transcription	Left Ventricle	heart
42	chr13:76148000-76158000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr13:76148000-76158000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr13:76148000-76158600	Weak transcription	HUVEC	blood vessel
45	chr13:76148000-76165200	Weak transcription	Brain Angular Gyrus	brain
46	chr13:76148000-76173800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr13:76148000-76174200	Weak transcription	HSMMtube	muscle
48	chr13:76148000-76178600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr13:76148200-76158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:76148200-76177200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links