Variant report

Variant	rs10509673
Chromosome Location	chr10:96236191-96236192
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96234155..96237347-chr10:96237389..96239974,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1047625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1065026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10882479	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187919	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187921	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188055	1.00[ASN][1000 genomes]
rs11814451	0.82[EUR][1000 genomes]
rs11815200	1.00[ASN][1000 genomes]
rs11817642	0.84[EUR][1000 genomes]
rs12243416	1.00[ASN][1000 genomes]
rs12246393	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249418	1.00[ASN][1000 genomes]
rs12260063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263131	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268719	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12269412	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12785061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209671	1.00[ASN][1000 genomes]
rs35891778	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077277	1.00[ASN][1000 genomes]
rs7904979	1.00[ASN][1000 genomes]
rs7911131	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:96212600-96248600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:96215600-96255200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:96216600-96243600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:96219800-96239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:96219800-96242800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:96219800-96283400	Weak transcription	Lung	lung
12	chr10:96220000-96248800	Weak transcription	Colonic Mucosa	Colon
13	chr10:96221800-96238000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:96221800-96255600	Weak transcription	Ovary	ovary
15	chr10:96222200-96237200	Weak transcription	Liver	Liver
16	chr10:96222800-96255800	Weak transcription	HepG2	liver
17	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
18	chr10:96223400-96237600	Weak transcription	Fetal Intestine Small	intestine
19	chr10:96223400-96240200	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:96223600-96237200	Weak transcription	Fetal Lung	lung
21	chr10:96223600-96242600	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:96224400-96237400	Weak transcription	Fetal Stomach	stomach
23	chr10:96227800-96237200	Weak transcription	Small Intestine	intestine
24	chr10:96227800-96255600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:96228000-96237200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:96228000-96243200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:96228600-96242200	Weak transcription	Brain Germinal Matrix	brain
28	chr10:96228600-96242400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:96230000-96243000	Weak transcription	Brain Substantia Nigra	brain
30	chr10:96230200-96242000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:96230400-96244000	Weak transcription	Pancreas	Pancrea
32	chr10:96230600-96237200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:96232200-96237800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:96232800-96237200	Weak transcription	Fetal Intestine Large	intestine
35	chr10:96233400-96237200	Weak transcription	Adipose Nuclei	Adipose
36	chr10:96233600-96239800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:96234000-96243600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:96234200-96236600	Weak transcription	Brain Angular Gyrus	brain
39	chr10:96234200-96237600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr10:96234400-96238200	Strong transcription	HSMM	muscle
41	chr10:96234600-96239000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:96235000-96238200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr10:96235000-96255200	Weak transcription	Osteobl	bone
44	chr10:96235200-96236400	Strong transcription	Placenta	Placenta
45	chr10:96235400-96237200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:96235600-96236400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr10:96235600-96243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:96236000-96236800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:96236000-96238000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:96236000-96248600	Weak transcription	Left Ventricle	heart

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