Variant report

Variant	rs11817642
Chromosome Location	chr10:96131947-96131948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10509673	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11187919	0.86[EUR][1000 genomes]
rs11187921	0.86[EUR][1000 genomes]
rs11187999	0.84[EUR][1000 genomes]
rs11814451	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246393	0.83[EUR][1000 genomes]
rs12248434	1.00[CEU][hapmap]
rs12255683	0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260063	1.00[CEU][hapmap]
rs12262606	0.84[EUR][1000 genomes]
rs12263131	0.86[EUR][1000 genomes]
rs12269412	0.83[EUR][1000 genomes]
rs12773803	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774398	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778016	1.00[ASN][1000 genomes]
rs12780240	1.00[ASN][1000 genomes]
rs12781481	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781628	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782263	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783744	1.00[ASN][1000 genomes]
rs12783751	1.00[ASN][1000 genomes]
rs12785061	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12785155	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1334596	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1678	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17438643	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17438706	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17439123	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17516758	1.00[ASN][1000 genomes]
rs17516904	1.00[ASN][1000 genomes]
rs17517368	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517515	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517578	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517669	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3203713	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34032820	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34053022	1.00[ASN][1000 genomes]
rs34156870	1.00[ASN][1000 genomes]
rs34573359	1.00[ASN][1000 genomes]
rs34818536	1.00[ASN][1000 genomes]
rs34999028	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058175	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35084709	1.00[ASN][1000 genomes]
rs35247409	1.00[ASN][1000 genomes]
rs35258481	1.00[ASN][1000 genomes]
rs35658839	1.00[ASN][1000 genomes]
rs4394764	1.00[ASN][1000 genomes]
rs57178050	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71480900	1.00[ASN][1000 genomes]
rs71482303	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482304	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482305	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482306	1.00[ASN][1000 genomes]
rs72812701	1.00[ASN][1000 genomes]
rs7911131	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96128000-96132200	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr10:96130600-96132200	Enhancers	Brain Substantia Nigra	brain
3	chr10:96131400-96132200	Weak transcription	Brain Angular Gyrus	brain
4	chr10:96131400-96132200	Weak transcription	Brain Hippocampus Middle	brain

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