Variant report

Variant	rs12262606
Chromosome Location	chr10:96245333-96245334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1047625	1.00[ASN][1000 genomes]
rs10509673	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1065026	1.00[ASN][1000 genomes]
rs10882479	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187919	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187921	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187999	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188055	1.00[ASN][1000 genomes]
rs11591641	1.00[ASN][1000 genomes]
rs11814451	0.82[EUR][1000 genomes]
rs11815200	1.00[ASN][1000 genomes]
rs11817642	0.84[EUR][1000 genomes]
rs12243416	1.00[ASN][1000 genomes]
rs12246393	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248434	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249418	1.00[ASN][1000 genomes]
rs12260063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263131	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268719	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12269412	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12785061	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785155	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334596	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209671	1.00[ASN][1000 genomes]
rs2296683	1.00[ASN][1000 genomes]
rs35891778	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077277	1.00[ASN][1000 genomes]
rs7904979	1.00[ASN][1000 genomes]
rs7911131	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:96212600-96248600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:96215600-96255200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:96219800-96283400	Weak transcription	Lung	lung
6	chr10:96220000-96248800	Weak transcription	Colonic Mucosa	Colon
7	chr10:96221800-96255600	Weak transcription	Ovary	ovary
8	chr10:96222800-96255800	Weak transcription	HepG2	liver
9	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
10	chr10:96227800-96255600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:96235000-96255200	Weak transcription	Osteobl	bone
12	chr10:96236000-96248600	Weak transcription	Left Ventricle	heart
13	chr10:96236000-96254400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:96236400-96268600	Weak transcription	HSMMtube	muscle
15	chr10:96237400-96248800	Weak transcription	Brain Angular Gyrus	brain
16	chr10:96237600-96258800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:96237600-96271400	Weak transcription	Placenta	Placenta
18	chr10:96238200-96258400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:96238200-96273400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:96240200-96271000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:96241400-96250200	Weak transcription	Fetal Lung	lung
22	chr10:96243200-96248600	Weak transcription	Brain Substantia Nigra	brain
23	chr10:96243400-96249000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:96243800-96251600	Weak transcription	HSMM	muscle
25	chr10:96244000-96253200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:96244000-96255800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:96244000-96262200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:96244000-96282600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:96244200-96248600	Weak transcription	Adipose Nuclei	Adipose
30	chr10:96244200-96248800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:96244400-96247600	Weak transcription	Fetal Intestine Small	intestine
32	chr10:96244400-96258400	Weak transcription	Fetal Stomach	stomach
33	chr10:96244400-96283600	Weak transcription	Pancreas	Pancrea
34	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
35	chr10:96245200-96267000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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