Variant report

Variant	rs10510751
Chromosome Location	chr3:46346025-46346026
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12495098	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17141006	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17141010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1799864	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1800024	0.87[EUR][1000 genomes]
rs34138562	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35728689	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3918357	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3918363	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3918364	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62242983	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62242995	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7632755	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46345200-46346400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:46345400-46350800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:46345600-46350600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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