Variant report

Variant	rs12495098
Chromosome Location	chr3:46342502-46342503
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10510751	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17078756	0.85[AFR][1000 genomes]
rs17141006	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17141010	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1799864	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1800024	0.81[EUR][1000 genomes]
rs34138562	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35728689	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3918357	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3918363	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3918364	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62242983	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62242995	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7632755	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46335000-46345400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46335400-46342800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:46337600-46342800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:46337600-46343400	Enhancers	Fetal Thymus	thymus
5	chr3:46337800-46343800	Enhancers	Dnd41	blood
6	chr3:46338000-46343600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:46338000-46343600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:46338200-46344200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:46338400-46342800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:46338400-46343600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:46338400-46343800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:46338400-46344800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:46338600-46344000	Enhancers	Primary T cells from cord blood	blood
14	chr3:46338600-46344200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:46338600-46344200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr3:46338600-46344400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr3:46338800-46343200	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:46339000-46342800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:46339000-46343200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr3:46339200-46343800	Enhancers	Primary B cells from cord blood	blood
21	chr3:46339200-46343800	Enhancers	Primary B cells from peripheral blood	blood
22	chr3:46340200-46343800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:46340600-46342800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:46340600-46342800	Weak transcription	Placenta	Placenta
25	chr3:46340800-46344000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:46340800-46344800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:46341200-46344200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:46341400-46344800	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:46342000-46343000	Enhancers	Adipose Nuclei	Adipose
30	chr3:46342000-46343000	Enhancers	Right Atrium	heart
31	chr3:46342200-46342800	Weak transcription	Spleen	Spleen
32	chr3:46342200-46345400	Enhancers	GM12878-XiMat	blood
33	chr3:46342400-46342600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:46342400-46343000	Enhancers	Duodenum Mucosa	Duodenum

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