Variant report

Variant	rs17141010
Chromosome Location	chr3:46392060-46392061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46388161..46392582-chr3:46393253..46399062,5	K562	blood:
2	chr3:46377692..46380545-chr3:46391345..46393642,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121807	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510751	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12495098	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17141006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800024	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894389	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34138562	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728689	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918357	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62242983	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62242995	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62246129	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62246130	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7632755	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46389600-46392400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr3:46390000-46392800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:46390200-46395000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:46390200-46395200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:46390200-46395200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:46390200-46396400	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:46390200-46397800	Enhancers	Fetal Thymus	thymus
8	chr3:46390400-46392400	Enhancers	Thymus	Thymus
9	chr3:46390400-46392400	Flanking Active TSS	Dnd41	blood
10	chr3:46390400-46392400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr3:46390800-46393000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:46390800-46396800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:46391000-46392400	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:46391200-46392200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr3:46391200-46395200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:46391600-46392400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr3:46391600-46392400	Enhancers	Spleen	Spleen
18	chr3:46391600-46395200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:46391800-46392400	Enhancers	Placenta	Placenta
20	chr3:46391800-46392400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr3:46391800-46393000	Enhancers	Primary T cells from cord blood	blood
22	chr3:46391800-46393200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:46391800-46393200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:46391800-46395400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:46391800-46396400	Enhancers	Primary B cells from peripheral blood	blood
26	chr3:46392000-46392400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr3:46392000-46392600	Enhancers	Primary B cells from cord blood	blood
28	chr3:46392000-46393000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr3:46392000-46393200	Enhancers	GM12878-XiMat	blood
30	chr3:46392000-46395200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:46392000-46395200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:46392000-46395400	Enhancers	Primary T helper cells PMA-I stimulated	--

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