Variant report

Variant	rs10511701
Chromosome Location	chr9:22112599-22112600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22003003..22006002-chr9:22110995..22113643,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1004638	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10116277	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10217586	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10733376	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10738606	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10738607	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10738608	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10738609	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10738610	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10757272	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10757273	0.90[ASN][1000 genomes]
rs10757274	0.90[EUR][1000 genomes]
rs10757275	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10757277	0.89[EUR][1000 genomes]
rs10757278	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs10757279	0.90[EUR][1000 genomes]
rs10811654	0.87[EUR][1000 genomes]
rs10811656	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1333042	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1333043	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333045	0.83[AMR][1000 genomes]
rs1333046	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1333047	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1333048	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1333049	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs1412834	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1537370	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1537371	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1537373	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1537374	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1537375	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1537376	0.97[EUR][1000 genomes]
rs1556516	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1970112	0.83[EUR][1000 genomes]
rs2383206	0.97[EUR][1000 genomes]
rs2383207	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2891168	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4977574	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4977575	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4977757	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6475606	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6475609	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341786	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341791	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857118	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7857345	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7859362	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859727	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs944797	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22097800-22122400	Weak transcription	Dnd41	blood
2	chr9:22104600-22116600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:22105800-22114000	Weak transcription	Colonic Mucosa	Colon
4	chr9:22105800-22117400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:22106600-22117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:22107600-22116800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:22107600-22117200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:22107800-22113200	Weak transcription	HepG2	liver
9	chr9:22109000-22117600	Weak transcription	Adipose Nuclei	Adipose
10	chr9:22110000-22112800	Weak transcription	Fetal Intestine Small	intestine
11	chr9:22110000-22113000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:22110600-22112600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:22110600-22112600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:22110600-22113200	Enhancers	NHLF	lung
15	chr9:22110800-22112600	Enhancers	Osteobl	bone
16	chr9:22110800-22113000	Enhancers	NH-A	brain
17	chr9:22111000-22112600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:22111000-22112600	Enhancers	NHDF-Ad	bronchial
19	chr9:22111200-22112600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:22111200-22112600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:22111200-22113400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:22111200-22113800	Enhancers	Stomach Mucosa	stomach
23	chr9:22111400-22116200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:22111800-22112600	Enhancers	HMEC	breast
25	chr9:22112000-22113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:22112000-22114000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:22112000-22114600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:22112200-22112800	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr9:22112200-22114200	Enhancers	Fetal Intestine Large	intestine
30	chr9:22112400-22114400	Weak transcription	HSMMtube	muscle
31	chr9:22112400-22114600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:22112400-22115000	Weak transcription	Hela-S3	cervix
33	chr9:22112400-22116400	Weak transcription	HUVEC	blood vessel
34	chr9:22112400-22116600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:22112400-22116600	Weak transcription	HSMM	muscle
36	chr9:22112400-22117400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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