Variant report

Variant	rs10757274
Chromosome Location	chr9:22096055-22096056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22095565..22097696-chr9:22107137..22108980,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1004638	0.90[EUR][1000 genomes]
rs10116277	0.85[EUR][1000 genomes]
rs10217586	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10511701	0.90[EUR][1000 genomes]
rs10733376	0.90[EUR][1000 genomes]
rs10738606	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10738607	0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10738608	0.95[EUR][1000 genomes]
rs10738609	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10738610	0.87[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10757272	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10757275	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10757277	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10757278	0.90[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10757279	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10811654	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10811656	0.85[EUR][1000 genomes]
rs1333042	0.95[EUR][1000 genomes]
rs1333043	0.93[EUR][1000 genomes]
rs1333045	0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1333046	0.87[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1333047	0.87[EUR][1000 genomes]
rs1333048	0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1333049	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs1412834	0.91[EUR][1000 genomes]
rs1537370	0.84[EUR][1000 genomes]
rs1537371	0.96[EUR][1000 genomes]
rs1537372	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1537373	0.96[EUR][1000 genomes]
rs1537374	0.90[EUR][1000 genomes]
rs1537375	0.91[EUR][1000 genomes]
rs1537376	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556516	0.96[EUR][1000 genomes]
rs1970112	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2210538	0.85[EUR][1000 genomes]
rs2383206	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2383207	0.90[EUR][1000 genomes]
rs2891168	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4977574	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4977575	0.87[EUR][1000 genomes]
rs4977757	0.91[EUR][1000 genomes]
rs6475606	0.85[EUR][1000 genomes]
rs6475609	0.93[EUR][1000 genomes]
rs7341786	0.89[EUR][1000 genomes]
rs7341791	0.89[EUR][1000 genomes]
rs7857118	0.92[EUR][1000 genomes]
rs7859362	0.93[EUR][1000 genomes]
rs7859727	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs944797	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9644860	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2589724	chr9:22092819-22096595	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3352887	chr9:22093297-22096194	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Coronary heart disease	22751097	GWAS catalog

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22080600-22098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:22086000-22097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22089600-22096800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:22089800-22096200	Weak transcription	Dnd41	blood
5	chr9:22096000-22099600	Enhancers	Hela-S3	cervix

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