Variant report

Variant	rs4977575
Chromosome Location	chr9:22124744-22124745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:22123237..22127319-chr9:22132072..22135694,5	MCF-7	breast:
2	chr2:128473087..128474607-chr9:22122413..22125135,2	MCF-7	breast:
3	chr9:22123972..22126695-chr9:22237756..22240192,3	MCF-7	breast:
4	chr9:22112229..22115017-chr9:22124442..22126062,2	MCF-7	breast:
5	chr9:22007027..22009439-chr9:22123072..22125624,2	MCF-7	breast:
6	chr9:22120411..22122460-chr9:22123757..22126512,2	MCF-7	breast:
7	chr9:22107525..22110347-chr9:22123401..22125908,2	MCF-7	breast:
8	chr9:22117626..22120036-chr9:22123513..22125253,2	MCF-7	breast:
9	chr9:22117582..22119733-chr9:22124572..22127238,3	MCF-7	breast:
10	chr9:22123951..22126513-chr9:22237605..22240050,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000240498	Chromatin interaction
ENSG00000147883	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1004638	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10116277	0.89[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs10511701	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10733376	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738606	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10738607	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10738608	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10738609	0.89[EUR][1000 genomes]
rs10738610	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs10757272	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757273	0.85[ASN][1000 genomes]
rs10757274	0.87[EUR][1000 genomes]
rs10757275	0.87[EUR][1000 genomes]
rs10757277	0.97[EUR][1000 genomes]
rs10757278	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10757279	0.98[EUR][1000 genomes]
rs10811654	0.84[EUR][1000 genomes]
rs10811656	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1333042	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1333043	0.90[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1333045	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1333046	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs1333047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1333048	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs1333049	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1412834	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1537370	0.89[CEU][hapmap]
rs1537371	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1537373	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1537374	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1537375	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1537376	0.91[EUR][1000 genomes]
rs1556516	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2383206	0.91[EUR][1000 genomes]
rs2383207	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2891168	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4977574	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4977757	0.80[EUR][1000 genomes]
rs6475606	0.89[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs6475609	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7341786	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7341791	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7857118	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7857345	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs7859362	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7859727	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs944797	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1029889	chr9:22118046-22161828	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22119000-22128200	Weak transcription	HSMMtube	muscle
2	chr9:22119800-22129000	Weak transcription	HMEC	breast
3	chr9:22120000-22129200	Weak transcription	Stomach Mucosa	stomach
4	chr9:22121800-22125200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:22123400-22125200	Genic enhancers	A549	lung
6	chr9:22123400-22126200	Enhancers	Fetal Intestine Small	intestine
7	chr9:22123800-22125200	Enhancers	Fetal Intestine Large	intestine
8	chr9:22124200-22124800	Flanking Active TSS	Hela-S3	cervix
9	chr9:22124200-22125000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:22124400-22124800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:22124400-22124800	Enhancers	Pancreas	Pancrea
12	chr9:22124400-22125200	Enhancers	HSMM	muscle
13	chr9:22124400-22125200	Enhancers	HUVEC	blood vessel
14	chr9:22124600-22125000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:22124600-22125000	Enhancers	NH-A	brain
16	chr9:22124600-22125200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:22124600-22125200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:22124600-22125200	Enhancers	Duodenum Mucosa	Duodenum
19	chr9:22124600-22125200	Enhancers	Osteobl	bone

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