Variant report

Variant	rs10512652
Chromosome Location	chr5:36422893-36422894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36416459..36418425-chr5:36422769..36425113,2	K562	blood:
2	chr5:36415024..36418425-chr5:36419163..36425113,5	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12522417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656145	0.81[EUR][1000 genomes]
rs16902999	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16903015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903019	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075151	0.93[EUR][1000 genomes]
rs4145732	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4416626	0.89[EUR][1000 genomes]
rs4422552	0.81[EUR][1000 genomes]
rs4440391	0.90[EUR][1000 genomes]
rs4460161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582306	0.89[EUR][1000 genomes]
rs56891224	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60202696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6451280	0.89[EUR][1000 genomes]
rs6451288	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6879763	0.89[EUR][1000 genomes]
rs6888731	0.89[EUR][1000 genomes]
rs6896179	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72730713	0.89[EUR][1000 genomes]
rs72730737	0.93[EUR][1000 genomes]
rs7709031	0.90[EUR][1000 genomes]
rs7718886	0.90[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36415600-36423000	Weak transcription	Fetal Kidney	kidney
2	chr5:36415600-36423200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:36416800-36423600	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:36418800-36423000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:36419000-36423000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:36419800-36430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:36420200-36423000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:36420200-36423200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:36420200-36423400	Weak transcription	Fetal Thymus	thymus
10	chr5:36420200-36423600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:36420200-36423800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:36420200-36423800	Weak transcription	Stomach Mucosa	stomach
13	chr5:36420400-36423000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:36421000-36423600	Weak transcription	Fetal Intestine Large	intestine
15	chr5:36421400-36423600	Enhancers	Hela-S3	cervix
16	chr5:36422200-36424200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:36422200-36424400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr5:36422400-36423000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:36422400-36423200	Enhancers	NH-A	brain
20	chr5:36422400-36424200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:36422400-36424600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:36422600-36424000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:36422600-36424000	Enhancers	HSMM	muscle
24	chr5:36422600-36424000	Enhancers	NHDF-Ad	bronchial
25	chr5:36422600-36424000	Enhancers	Osteobl	bone
26	chr5:36422600-36424400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:36422600-36424400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:36422800-36424000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr5:36422800-36424000	Enhancers	NHEK	skin
30	chr5:36422800-36424200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:36422800-36424200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:36422800-36432000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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