Variant report

Variant	rs16902999
Chromosome Location	chr5:36402905-36402906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512652	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12522417	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12522731	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12656145	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16902995	0.80[ASN][1000 genomes]
rs16903015	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16903019	0.86[EUR][1000 genomes]
rs35113974	0.80[ASN][1000 genomes]
rs4075151	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4145732	0.86[EUR][1000 genomes]
rs4416626	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4422552	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4440391	0.80[EUR][1000 genomes]
rs4460161	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4582306	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56891224	0.86[EUR][1000 genomes]
rs60202696	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6451280	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6879763	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6888731	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6896179	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72730713	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72730737	0.83[EUR][1000 genomes]
rs7709031	0.80[EUR][1000 genomes]
rs7718886	0.80[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36391200-36403200	Weak transcription	Placenta	Placenta
2	chr5:36393800-36403600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:36398400-36403600	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:36398400-36403600	Weak transcription	Fetal Lung	lung
5	chr5:36400600-36404000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:36400600-36405200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:36402200-36403400	Enhancers	NHDF-Ad	bronchial
8	chr5:36402200-36405400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:36402600-36403200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:36402600-36403400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:36402600-36403600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:36402600-36404800	Enhancers	Primary B cells from peripheral blood	blood
13	chr5:36402600-36405000	Enhancers	NHLF	lung
14	chr5:36402800-36403000	Flanking Active TSS	Liver	Liver
15	chr5:36402800-36403400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:36402800-36403400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:36402800-36403400	Enhancers	HSMM	muscle
18	chr5:36402800-36403600	Flanking Active TSS	HepG2	liver
19	chr5:36402800-36403600	Enhancers	Osteobl	bone
20	chr5:36402800-36404800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:36402800-36405000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:36402800-36405000	Enhancers	NH-A	brain
23	chr5:36402800-36405200	Enhancers	HSMMtube	muscle

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