Variant report

Variant	rs6888731
Chromosome Location	chr5:36404657-36404658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10512652	0.89[EUR][1000 genomes]
rs12522417	0.89[EUR][1000 genomes]
rs12522731	0.89[EUR][1000 genomes]
rs12656145	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16902999	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16903015	0.89[EUR][1000 genomes]
rs16903019	0.86[EUR][1000 genomes]
rs4075151	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4145732	0.86[EUR][1000 genomes]
rs4416626	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4422552	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4440391	0.80[EUR][1000 genomes]
rs4460161	0.89[EUR][1000 genomes]
rs4582306	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56891224	0.86[EUR][1000 genomes]
rs60202696	0.89[EUR][1000 genomes]
rs6451280	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451282	0.91[ASN][1000 genomes]
rs6879763	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6896179	0.83[EUR][1000 genomes]
rs72730713	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72730737	0.83[EUR][1000 genomes]
rs7709031	0.87[EUR][1000 genomes]
rs7718886	0.80[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36400600-36405200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:36402200-36405400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:36402600-36404800	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:36402600-36405000	Enhancers	NHLF	lung
5	chr5:36402800-36404800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:36402800-36405000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:36402800-36405000	Enhancers	NH-A	brain
8	chr5:36402800-36405200	Enhancers	HSMMtube	muscle
9	chr5:36403000-36405200	Enhancers	Liver	Liver
10	chr5:36403200-36404800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:36403400-36404800	Enhancers	Adipose Nuclei	Adipose
12	chr5:36403400-36406400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:36403600-36405600	Enhancers	HepG2	liver
14	chr5:36403800-36405000	Enhancers	HSMM	muscle
15	chr5:36403800-36406000	Enhancers	NHDF-Ad	bronchial
16	chr5:36404000-36405000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:36404200-36404800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr5:36404400-36404800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:36404400-36404800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr5:36404400-36405000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr5:36404600-36405200	Enhancers	Osteobl	bone
22	chr5:36404600-36405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:36404600-36405600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:36404600-36406000	Weak transcription	Ovary	ovary

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