Variant report

Variant	rs10513014
Chromosome Location	chr3:136499728-136499729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136499197..136501261-chr3:136509704..136512204,2	K562	blood:
2	chr3:136489373..136491844-chr3:136498899..136501779,2	MCF-7	breast:
3	chr3:136498020..136500935-chr3:136501120..136504401,3	MCF-7	breast:
4	chr3:136470266..136473022-chr3:136498014..136500937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10155016	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10155017	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10935186	0.83[CHB][hapmap]
rs11919030	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs12107125	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1280624	0.93[ASN][1000 genomes]
rs13433980	0.95[CEU][hapmap]
rs1484250	0.95[CEU][hapmap]
rs1681817	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1729951	0.93[CHB][hapmap];0.95[ASN][1000 genomes]
rs1872240	0.85[EUR][1000 genomes]
rs2062322	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs28489907	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34992220	0.95[CEU][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35874192	0.89[ASN][1000 genomes]
rs4038578	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4336059	0.90[CEU][hapmap]
rs4408829	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs4521165	0.92[CHB][hapmap]
rs6439649	0.92[CHB][hapmap]
rs6764567	0.81[ASN][1000 genomes]
rs6765239	0.95[CEU][hapmap]
rs6771713	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6782151	0.90[CEU][hapmap]
rs6789329	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6791142	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs6799699	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6800969	0.95[CEU][hapmap]
rs6802702	0.92[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs7616204	0.92[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7618518	0.92[CHB][hapmap]
rs7618871	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs7623824	0.90[CEU][hapmap]
rs7644346	0.95[CEU][hapmap]
rs900818	0.92[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs940174	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9813590	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9813596	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9820513	0.95[CEU][hapmap]
rs9821478	0.93[JPT][hapmap]
rs9833207	0.92[JPT][hapmap]
rs9836231	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs9839574	0.95[CEU][hapmap]
rs9845950	0.95[CEU][hapmap]
rs9853960	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9869957	0.95[CEU][hapmap]
rs9881078	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136498000-136502800	Weak transcription	Hela-S3	cervix
2	chr3:136498200-136500400	Weak transcription	Fetal Heart	heart
3	chr3:136498200-136501000	Weak transcription	Spleen	Spleen
4	chr3:136498200-136502000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:136498200-136502400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:136498200-136502400	Weak transcription	A549	lung
7	chr3:136498200-136502600	Weak transcription	NH-A	brain
8	chr3:136498200-136504400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:136498200-136505000	Weak transcription	Osteobl	bone
10	chr3:136498200-136505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:136498400-136502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:136498400-136502800	Weak transcription	HSMMtube	muscle
13	chr3:136498600-136502600	Weak transcription	HSMM	muscle
14	chr3:136499000-136500200	Enhancers	Fetal Stomach	stomach
15	chr3:136499200-136500200	Weak transcription	Placenta	Placenta
16	chr3:136499200-136502600	Weak transcription	Aorta	Aorta
17	chr3:136499200-136504400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:136499600-136502600	Weak transcription	Fetal Lung	lung

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