Variant report
| Variant | rs9853960 |
|---|---|
| Chromosome Location | chr3:136487989-136487990 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:136471103..136473077-chr3:136487227..136489991,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118007 | Chromatin interaction |
| ENSG00000261758 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10155016 | 0.90[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10155017 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10513014 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12107125 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1872240 | 0.83[EUR][1000 genomes] |
| rs28489907 | 0.92[EUR][1000 genomes] |
| rs34992220 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61322732 | 0.91[ASN][1000 genomes] |
| rs61508594 | 0.91[ASN][1000 genomes] |
| rs61790842 | 0.91[ASN][1000 genomes] |
| rs6439656 | 0.99[ASN][1000 genomes] |
| rs6771713 | 0.83[EUR][1000 genomes] |
| rs6789329 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6795227 | 0.99[ASN][1000 genomes] |
| rs6799699 | 0.83[EUR][1000 genomes] |
| rs9812541 | 0.88[ASN][1000 genomes] |
| rs9813590 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9813596 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9871160 | 0.84[ASN][1000 genomes] |
| rs9881078 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006737 | chr3:136466188-136530743 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | esv33758 | chr3:136480745-136492394 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
