Variant report

Variant	rs61322732
Chromosome Location	chr3:136476568-136476569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000239213	Chromatin interaction
ENSG00000158092	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28452147	0.86[ASN][1000 genomes]
rs34992220	0.88[ASN][1000 genomes]
rs55646943	0.88[EUR][1000 genomes]
rs61508594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790842	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6439656	0.92[ASN][1000 genomes]
rs6795227	0.92[ASN][1000 genomes]
rs73230097	0.88[EUR][1000 genomes]
rs9812541	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9813590	0.81[ASN][1000 genomes]
rs9833207	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9834574	0.84[EUR][1000 genomes]
rs9853960	0.91[ASN][1000 genomes]
rs9871160	0.83[ASN][1000 genomes]
rs9875034	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136473000-136476600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:136473000-136476800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:136473000-136476800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:136473000-136477200	Weak transcription	Adipose Nuclei	Adipose
5	chr3:136473200-136476600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:136473200-136476800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:136473200-136477200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:136473600-136476800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:136473600-136477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:136473600-136477000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:136476400-136476800	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links