Variant report

Variant	rs9812541
Chromosome Location	chr3:136482244-136482245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28452147	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34992220	0.86[ASN][1000 genomes]
rs55646943	0.81[EUR][1000 genomes]
rs59554065	0.87[AFR][1000 genomes]
rs61322732	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61508594	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61790842	0.97[ASN][1000 genomes]
rs6439656	0.89[ASN][1000 genomes]
rs6795227	0.89[ASN][1000 genomes]
rs73230097	0.81[EUR][1000 genomes]
rs73863952	0.91[AFR][1000 genomes]
rs7640942	0.90[AFR][1000 genomes]
rs9833207	0.81[ASN][1000 genomes]
rs9853960	0.88[ASN][1000 genomes]
rs9871160	0.80[ASN][1000 genomes]
rs9875034	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv33758	chr3:136480745-136492394	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136482000-136482800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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