Variant report

Variant	rs73863952
Chromosome Location	chr3:136452540-136452541
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs28452147	0.84[AFR][1000 genomes]
rs56183552	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58021491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58206781	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59554065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60073313	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs6439666	1.00[EUR][1000 genomes]
rs6773054	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72985268	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73863630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863634	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863911	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635059	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640942	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642679	1.00[EUR][1000 genomes]
rs7646127	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651059	1.00[EUR][1000 genomes]
rs7652657	1.00[EUR][1000 genomes]
rs9812541	0.91[AFR][1000 genomes]
rs9942116	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136426600-136453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:136431000-136454600	Weak transcription	Hela-S3	cervix
3	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
4	chr3:136432600-136454000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:136433200-136462600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:136438000-136458000	Weak transcription	Esophagus	oesophagus
7	chr3:136438800-136461200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:136439200-136454400	Weak transcription	Fetal Stomach	stomach
9	chr3:136443800-136452600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:136444000-136455000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:136444200-136455000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:136445200-136453400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:136445400-136460000	Weak transcription	Gastric	stomach
14	chr3:136446400-136453600	Weak transcription	Fetal Heart	heart
15	chr3:136446400-136460000	Weak transcription	K562	blood
16	chr3:136448000-136453000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:136448000-136453200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:136448000-136453800	Weak transcription	Ovary	ovary
19	chr3:136448000-136455600	Weak transcription	Fetal Lung	lung
20	chr3:136448000-136460800	Weak transcription	Brain Germinal Matrix	brain
21	chr3:136448200-136453200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:136448200-136453200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:136448200-136453400	Weak transcription	Adipose Nuclei	Adipose
24	chr3:136448200-136453600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:136448200-136453800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:136448200-136454000	Enhancers	Brain Substantia Nigra	brain
27	chr3:136448200-136455000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:136448200-136459800	Weak transcription	Osteobl	bone
29	chr3:136448200-136460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:136448200-136467600	Weak transcription	HSMM	muscle
31	chr3:136448200-136467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:136448200-136467800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:136448200-136467800	Weak transcription	HSMMtube	muscle
34	chr3:136448400-136453200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:136448400-136455400	Weak transcription	NH-A	brain
36	chr3:136448400-136459800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:136448600-136460200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr3:136448600-136462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:136448600-136463800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:136448600-136467600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:136449000-136453800	Weak transcription	Right Atrium	heart
42	chr3:136449000-136454000	Weak transcription	Lung	lung
43	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:136449200-136453400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:136449200-136454600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr3:136449800-136462400	Weak transcription	Dnd41	blood
47	chr3:136450000-136453000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:136450000-136453800	Weak transcription	Spleen	Spleen
49	chr3:136450200-136461200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:136450400-136453000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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