Variant report

Variant	rs60778309
Chromosome Location	chr3:136216306-136216307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs34149860	1.00[EUR][1000 genomes]
rs55655018	1.00[EUR][1000 genomes]
rs55674785	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56043110	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56183552	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56381882	1.00[EUR][1000 genomes]
rs57494495	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58021491	1.00[EUR][1000 genomes]
rs58206781	1.00[EUR][1000 genomes]
rs58336248	1.00[EUR][1000 genomes]
rs58493992	1.00[EUR][1000 genomes]
rs58544452	1.00[EUR][1000 genomes]
rs58672018	0.91[AMR][1000 genomes]
rs59554065	1.00[EUR][1000 genomes]
rs59778182	1.00[EUR][1000 genomes]
rs60073313	1.00[EUR][1000 genomes]
rs61160497	1.00[EUR][1000 genomes]
rs61400878	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773054	1.00[EUR][1000 genomes]
rs6790219	1.00[EUR][1000 genomes]
rs73863333	1.00[EUR][1000 genomes]
rs73863336	1.00[EUR][1000 genomes]
rs73863337	1.00[EUR][1000 genomes]
rs73863608	1.00[EUR][1000 genomes]
rs73863611	1.00[EUR][1000 genomes]
rs73863618	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863622	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863623	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863630	1.00[EUR][1000 genomes]
rs73863634	1.00[EUR][1000 genomes]
rs73863640	1.00[EUR][1000 genomes]
rs73863952	1.00[EUR][1000 genomes]
rs7613584	1.00[EUR][1000 genomes]
rs7626261	1.00[EUR][1000 genomes]
rs7646127	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv877524	chr3:136112109-136295283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv877525	chr3:136112109-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv877526	chr3:136149139-136310985	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv877527	chr3:136182053-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv877528	chr3:136209550-136295283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv591850	chr3:136209550-136300732	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:136176600-136222800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:136176600-136224200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:136176600-136224400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:136176600-136231800	Weak transcription	Psoas Muscle	Psoas
6	chr3:136176600-136240000	Weak transcription	HMEC	breast
7	chr3:136176600-136260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:136176800-136228000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:136176800-136266200	Weak transcription	Hela-S3	cervix
10	chr3:136177200-136236400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:136178600-136220200	Weak transcription	Fetal Brain Male	brain
12	chr3:136191000-136220000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:136191400-136268000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:136192200-136225600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:136192400-136252400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:136193800-136217200	Weak transcription	HepG2	liver
17	chr3:136193800-136231400	Weak transcription	NHLF	lung
18	chr3:136193800-136239200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:136195000-136220400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:136195000-136223000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:136195200-136231000	Weak transcription	Osteobl	bone
22	chr3:136195400-136218200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:136195400-136231400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:136195400-136232000	Weak transcription	Right Ventricle	heart
25	chr3:136195400-136241800	Weak transcription	NH-A	brain
26	chr3:136195400-136250400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:136195400-136278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:136195600-136220200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:136195600-136224000	Weak transcription	Brain Angular Gyrus	brain
30	chr3:136203000-136224600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:136205200-136220800	Weak transcription	Fetal Brain Female	brain
32	chr3:136206400-136220400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:136206600-136217400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:136207000-136217800	Weak transcription	Liver	Liver
35	chr3:136208400-136230400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:136208800-136217600	Weak transcription	Primary T cells from cord blood	blood
37	chr3:136210200-136225800	Weak transcription	NHDF-Ad	bronchial
38	chr3:136210400-136220400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:136210800-136229600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr3:136211600-136221000	Weak transcription	HSMM	muscle
41	chr3:136211600-136232000	Weak transcription	Fetal Kidney	kidney
42	chr3:136211800-136218000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr3:136212200-136229200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:136212200-136323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:136212400-136217400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:136212400-136223200	Weak transcription	Fetal Heart	heart
47	chr3:136212400-136231000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:136212400-136232000	Weak transcription	Aorta	Aorta
49	chr3:136212400-136241600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:136212400-136249600	Weak transcription	Lung	lung

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