Variant report

Variant	rs6790219
Chromosome Location	chr3:136075751-136075752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs34149860	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55655018	1.00[EUR][1000 genomes]
rs55674785	1.00[EUR][1000 genomes]
rs56043110	1.00[EUR][1000 genomes]
rs56381882	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58336248	1.00[EUR][1000 genomes]
rs58493992	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58544452	1.00[EUR][1000 genomes]
rs59778182	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60414862	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs61160497	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61400878	1.00[EUR][1000 genomes]
rs73863333	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863336	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863608	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863611	1.00[EUR][1000 genomes]
rs73863618	1.00[EUR][1000 genomes]
rs73863622	1.00[EUR][1000 genomes]
rs73863623	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73863630	1.00[EUR][1000 genomes]
rs73865203	1.00[EUR][1000 genomes]
rs7613584	1.00[EUR][1000 genomes]
rs7626261	1.00[EUR][1000 genomes]
rs9917813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136042400-136078800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
3	chr3:136043600-136082000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:136045600-136079200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:136047600-136098000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:136054200-136085400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:136054600-136172000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:136054800-136076600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:136055600-136100800	Weak transcription	Spleen	Spleen
10	chr3:136059600-136079000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:136063400-136139000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:136063400-136139000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:136063600-136097000	Weak transcription	Colonic Mucosa	Colon
14	chr3:136063600-136105600	Weak transcription	Gastric	stomach
15	chr3:136063600-136110600	Weak transcription	Small Intestine	intestine
16	chr3:136063600-136139200	Weak transcription	Pancreas	Pancrea
17	chr3:136063800-136095200	Weak transcription	Lung	lung
18	chr3:136065400-136097200	Weak transcription	HepG2	liver
19	chr3:136067600-136109000	Weak transcription	HUVEC	blood vessel
20	chr3:136068400-136076400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:136068400-136076800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:136068400-136083800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:136068400-136085000	Weak transcription	Fetal Kidney	kidney
24	chr3:136068600-136103800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:136069200-136079000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:136069400-136083800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:136069400-136121200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:136069600-136080400	Weak transcription	Esophagus	oesophagus
29	chr3:136069600-136087000	Weak transcription	Hela-S3	cervix
30	chr3:136069600-136107400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:136069600-136138800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:136069600-136139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:136069800-136076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:136069800-136077600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:136069800-136080600	Weak transcription	Placenta	Placenta
36	chr3:136069800-136083000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:136069800-136084800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:136069800-136085000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:136069800-136088800	Weak transcription	HMEC	breast
40	chr3:136069800-136106600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:136069800-136118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:136069800-136159600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:136070400-136095000	Weak transcription	NH-A	brain
44	chr3:136070600-136084600	Weak transcription	HSMM	muscle
45	chr3:136070600-136101000	Weak transcription	Right Ventricle	heart
46	chr3:136070600-136105800	Weak transcription	Psoas Muscle	Psoas
47	chr3:136070800-136076000	Weak transcription	Fetal Thymus	thymus
48	chr3:136070800-136077000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:136070800-136077600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr3:136070800-136085200	Weak transcription	Fetal Heart	heart

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