Variant report

Variant	rs73863622
Chromosome Location	chr3:136194792-136194793
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs34149860	1.00[EUR][1000 genomes]
rs55655018	1.00[EUR][1000 genomes]
rs55674785	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56043110	1.00[EUR][1000 genomes]
rs56183552	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56381882	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57494495	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58021491	1.00[EUR][1000 genomes]
rs58206781	1.00[EUR][1000 genomes]
rs58336248	1.00[EUR][1000 genomes]
rs58493992	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58544452	1.00[EUR][1000 genomes]
rs58672018	1.00[AMR][1000 genomes]
rs59778182	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60778309	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61160497	1.00[EUR][1000 genomes]
rs61400878	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6790219	1.00[EUR][1000 genomes]
rs73863333	1.00[EUR][1000 genomes]
rs73863336	1.00[EUR][1000 genomes]
rs73863337	1.00[EUR][1000 genomes]
rs73863608	1.00[EUR][1000 genomes]
rs73863611	1.00[EUR][1000 genomes]
rs73863618	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863623	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863625	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863630	1.00[EUR][1000 genomes]
rs73863634	1.00[EUR][1000 genomes]
rs73863640	1.00[EUR][1000 genomes]
rs7613584	1.00[EUR][1000 genomes]
rs7626261	1.00[EUR][1000 genomes]
rs7646127	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv877524	chr3:136112109-136295283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv877525	chr3:136112109-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv877526	chr3:136149139-136310985	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv877527	chr3:136182053-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:136176600-136195000	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:136176600-136195000	Weak transcription	Spleen	Spleen
4	chr3:136176600-136196600	Weak transcription	HUVEC	blood vessel
5	chr3:136176600-136212000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:136176600-136222800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:136176600-136224200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:136176600-136224400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:136176600-136231800	Weak transcription	Psoas Muscle	Psoas
10	chr3:136176600-136240000	Weak transcription	HMEC	breast
11	chr3:136176600-136260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:136176800-136194800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:136176800-136205800	Weak transcription	Small Intestine	intestine
14	chr3:136176800-136228000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:136176800-136266200	Weak transcription	Hela-S3	cervix
16	chr3:136177200-136236400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:136177400-136198400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:136178000-136212000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:136178400-136208200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:136178600-136220200	Weak transcription	Fetal Brain Male	brain
21	chr3:136179400-136204000	Weak transcription	Fetal Intestine Small	intestine
22	chr3:136179800-136212000	Weak transcription	Fetal Heart	heart
23	chr3:136181200-136205400	Weak transcription	Fetal Kidney	kidney
24	chr3:136181400-136211600	Weak transcription	A549	lung
25	chr3:136181800-136196000	Weak transcription	K562	blood
26	chr3:136182000-136204400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:136183600-136195000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:136183800-136195000	Weak transcription	Aorta	Aorta
29	chr3:136183800-136212000	Weak transcription	Lung	lung
30	chr3:136185200-136194800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:136189400-136196600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:136189800-136195600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:136189800-136195800	Strong transcription	Liver	Liver
34	chr3:136189800-136196600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr3:136189800-136196600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:136189800-136197200	Strong transcription	Dnd41	blood
37	chr3:136189800-136197600	Weak transcription	Brain Substantia Nigra	brain
38	chr3:136190200-136195600	Strong transcription	Adipose Nuclei	Adipose
39	chr3:136190400-136195400	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr3:136190400-136195800	Strong transcription	Fetal Thymus	thymus
41	chr3:136190400-136196600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:136190400-136196600	Strong transcription	Primary T cells from cord blood	blood
43	chr3:136190600-136196200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:136190800-136195200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:136190800-136196400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:136191000-136195600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:136191000-136196600	Weak transcription	Gastric	stomach
48	chr3:136191000-136220000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr3:136191200-136195400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr3:136191400-136195400	Strong transcription	Fetal Muscle Leg	muscle

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