Variant report

Variant	rs73863336
Chromosome Location	chr3:136039643-136039644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs34149860	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55655018	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55674785	1.00[EUR][1000 genomes]
rs56043110	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56381882	1.00[EUR][1000 genomes]
rs58336248	1.00[EUR][1000 genomes]
rs58493992	1.00[EUR][1000 genomes]
rs58544452	1.00[EUR][1000 genomes]
rs59778182	1.00[EUR][1000 genomes]
rs60414862	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs61160497	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61400878	1.00[EUR][1000 genomes]
rs6790219	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863333	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73863337	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863611	1.00[EUR][1000 genomes]
rs73863618	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863622	1.00[EUR][1000 genomes]
rs73863623	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73865203	1.00[EUR][1000 genomes]
rs7613584	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7626261	1.00[EUR][1000 genomes]
rs9917813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135981200-136052000	Weak transcription	NH-A	brain
2	chr3:135998000-136040200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
4	chr3:136014200-136040000	Weak transcription	Small Intestine	intestine
5	chr3:136016800-136045600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:136017000-136040000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:136018200-136051400	Weak transcription	A549	lung
8	chr3:136020200-136040200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:136020200-136045200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:136020400-136045200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:136020400-136045200	Weak transcription	Colonic Mucosa	Colon
12	chr3:136020600-136045000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:136020600-136045200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:136020800-136040200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:136020800-136040200	Weak transcription	Esophagus	oesophagus
16	chr3:136020800-136042200	Weak transcription	Placenta	Placenta
17	chr3:136020800-136043000	Weak transcription	HSMM	muscle
18	chr3:136020800-136045000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:136021000-136040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:136021000-136045400	Weak transcription	Gastric	stomach
21	chr3:136021000-136045600	Weak transcription	Osteobl	bone
22	chr3:136021200-136039800	Weak transcription	NHEK	skin
23	chr3:136021200-136040000	Weak transcription	Thymus	Thymus
24	chr3:136030600-136040200	Weak transcription	Pancreas	Pancrea
25	chr3:136032800-136055400	Weak transcription	HUVEC	blood vessel
26	chr3:136035600-136040200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:136035600-136040600	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:136036400-136044200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:136036800-136040000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:136036800-136043400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:136037000-136040400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:136037000-136041600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr3:136037000-136045200	Weak transcription	Brain Angular Gyrus	brain
34	chr3:136037200-136040000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:136037200-136040200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:136037200-136040200	Weak transcription	Lung	lung
37	chr3:136037200-136045200	Weak transcription	Fetal Stomach	stomach
38	chr3:136037600-136045200	Weak transcription	K562	blood
39	chr3:136037600-136045400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:136037800-136041000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:136037800-136042200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:136038000-136040000	Weak transcription	Ovary	ovary
43	chr3:136038000-136042600	ZNF genes & repeats	Dnd41	blood
44	chr3:136038200-136040000	ZNF genes & repeats	Fetal Brain Male	brain
45	chr3:136038200-136040200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr3:136038200-136040600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
47	chr3:136038200-136041000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
48	chr3:136038200-136041800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr3:136038200-136042800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr3:136038200-136043000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links