Variant report

Variant	rs7626261
Chromosome Location	chr3:136052385-136052386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135913296..135916091-chr3:136051833..136053446,2	MCF-7	breast:
2	chr3:136050884..136053004-chr3:136057100..136060594,3	K562	blood:
3	chr3:136033614..136036060-chr3:136051639..136053164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs34149860	1.00[EUR][1000 genomes]
rs55655018	1.00[EUR][1000 genomes]
rs55674785	1.00[EUR][1000 genomes]
rs56043110	1.00[EUR][1000 genomes]
rs56381882	1.00[EUR][1000 genomes]
rs58336248	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58493992	1.00[EUR][1000 genomes]
rs58544452	1.00[EUR][1000 genomes]
rs59778182	1.00[EUR][1000 genomes]
rs60414862	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs61160497	1.00[EUR][1000 genomes]
rs61400878	1.00[EUR][1000 genomes]
rs6790219	1.00[EUR][1000 genomes]
rs73863333	1.00[EUR][1000 genomes]
rs73863336	1.00[EUR][1000 genomes]
rs73863337	1.00[EUR][1000 genomes]
rs73863608	1.00[EUR][1000 genomes]
rs73863611	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863618	1.00[EUR][1000 genomes]
rs73863622	1.00[EUR][1000 genomes]
rs73863623	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73865203	1.00[EUR][1000 genomes]
rs7613584	1.00[EUR][1000 genomes]
rs9917813	0.95[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
2	chr3:136032800-136055400	Weak transcription	HUVEC	blood vessel
3	chr3:136039000-136072400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:136039200-136062400	Weak transcription	Fetal Heart	heart
5	chr3:136040400-136062800	Weak transcription	Stomach Mucosa	stomach
6	chr3:136040600-136061400	Weak transcription	Small Intestine	intestine
7	chr3:136041000-136052800	Weak transcription	Fetal Kidney	kidney
8	chr3:136042400-136058200	Weak transcription	Psoas Muscle	Psoas
9	chr3:136042400-136078800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:136042600-136053200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:136042600-136072600	Strong transcription	Dnd41	blood
12	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
13	chr3:136043600-136082000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:136043800-136070400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:136044800-136054600	Strong transcription	Brain Inferior Temporal Lobe	brain
16	chr3:136045200-136060800	Strong transcription	Liver	Liver
17	chr3:136045200-136062000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:136045600-136079200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:136046200-136060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:136047200-136052600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:136047400-136052600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:136047600-136098000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:136047800-136052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:136047800-136068200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:136047800-136074800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:136048000-136052400	Weak transcription	Colonic Mucosa	Colon
27	chr3:136048000-136054200	Weak transcription	HMEC	breast
28	chr3:136048200-136052600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:136048200-136052600	Weak transcription	Fetal Lung	lung
30	chr3:136048200-136052800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:136048200-136053200	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:136048200-136060200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:136048400-136052400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:136048400-136062800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:136048800-136052400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr3:136048800-136052400	Weak transcription	Lung	lung
37	chr3:136048800-136052600	Weak transcription	Brain Anterior Caudate	brain
38	chr3:136048800-136052800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:136048800-136053000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:136048800-136053200	Weak transcription	Right Ventricle	heart
41	chr3:136048800-136062600	Weak transcription	NHEK	skin
42	chr3:136049000-136052400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:136049000-136052400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:136049000-136052600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:136049000-136056000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:136049000-136062800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr3:136049200-136052400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:136050200-136052400	Weak transcription	K562	blood
49	chr3:136050800-136054200	Strong transcription	Brain Hippocampus Middle	brain
50	chr3:136050800-136062800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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