Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135915695..135917970-chr3:135924534..135927537,3	K562	blood:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs34149860	1.00[EUR][1000 genomes]
rs55655018	1.00[EUR][1000 genomes]
rs56381882	1.00[EUR][1000 genomes]
rs56722014	1.00[EUR][1000 genomes]
rs58336248	1.00[EUR][1000 genomes]
rs58493992	1.00[EUR][1000 genomes]
rs59778182	1.00[EUR][1000 genomes]
rs60414862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61160497	1.00[EUR][1000 genomes]
rs6790219	1.00[EUR][1000 genomes]
rs73863190	1.00[EUR][1000 genomes]
rs73863191	1.00[EUR][1000 genomes]
rs73863333	1.00[EUR][1000 genomes]
rs73863336	1.00[EUR][1000 genomes]
rs73863337	1.00[EUR][1000 genomes]
rs73863608	1.00[EUR][1000 genomes]
rs73863611	1.00[EUR][1000 genomes]
rs73863618	1.00[EUR][1000 genomes]
rs73865203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7613584	1.00[EUR][1000 genomes]
rs7626261	0.95[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135923400-135931400	Weak transcription	HepG2	liver
2	chr3:135924400-135927000	Enhancers	Brain Germinal Matrix	brain
3	chr3:135924800-135927200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:135925400-135926200	Enhancers	Fetal Brain Male	brain
5	chr3:135925800-135926400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: