Variant report

Variant	rs73863191
Chromosome Location	chr3:135772292-135772293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr3:135772274-135772615	NT2-D1	testis:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135767256..135769755-chr3:135772034..135773632,2	K562	blood:

Variant related genes	Relation type
ENSG00000227267	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56722014	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58632861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60414862	1.00[EUR][1000 genomes]
rs6791659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863190	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73865203	1.00[EUR][1000 genomes]
rs9917813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv4023	chr3:135772198-135816635	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135738000-135775800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:135742800-135774200	Weak transcription	HMEC	breast
3	chr3:135746200-135790000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:135750400-135772800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:135750800-135775800	Weak transcription	Liver	Liver
6	chr3:135755200-135801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:135761000-135802400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:135761600-135783400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:135762200-135772800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:135762200-135773000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:135762200-135774000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:135763000-135785600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:135763200-135772600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:135763200-135775000	Strong transcription	Fetal Muscle Leg	muscle
15	chr3:135763200-135776800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:135763600-135775600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:135764400-135790400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:135764600-135773800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:135764600-135774400	Weak transcription	NHEK	skin
20	chr3:135764600-135778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:135764800-135775800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:135764800-135790400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:135765000-135774200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:135765000-135776400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:135765000-135777800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:135765000-135781000	Weak transcription	Fetal Brain Female	brain
27	chr3:135765000-135781200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:135765000-135781200	Weak transcription	Fetal Intestine Small	intestine
29	chr3:135765000-135786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:135765000-135801800	Weak transcription	Esophagus	oesophagus
31	chr3:135765400-135777600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:135765600-135784200	Weak transcription	Fetal Kidney	kidney
33	chr3:135765600-135785400	Weak transcription	Pancreas	Pancrea
34	chr3:135767000-135772600	Strong transcription	Ovary	ovary
35	chr3:135767000-135772600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr3:135767000-135775000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr3:135767200-135774400	Weak transcription	Fetal Brain Male	brain
38	chr3:135767800-135773000	Strong transcription	NHDF-Ad	bronchial
39	chr3:135768000-135774000	Weak transcription	HUVEC	blood vessel
40	chr3:135768000-135776600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:135768400-135772600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:135768400-135773000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:135768800-135774000	Weak transcription	Fetal Heart	heart
44	chr3:135768800-135776600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr3:135768800-135800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:135769000-135772600	Strong transcription	Fetal Stomach	stomach
47	chr3:135769200-135772800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:135769400-135774200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr3:135769600-135774000	Weak transcription	Adipose Nuclei	Adipose
50	chr3:135769600-135774200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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