Variant report

Variant	rs73863190
Chromosome Location	chr3:135767911-135767912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135767256..135769755-chr3:135772034..135773632,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56722014	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58632861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60414862	1.00[EUR][1000 genomes]
rs6791659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73865203	1.00[EUR][1000 genomes]
rs9917813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135727800-135769400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:135738000-135775800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:135742800-135774200	Weak transcription	HMEC	breast
4	chr3:135746200-135790000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:135750400-135772800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:135750800-135775800	Weak transcription	Liver	Liver
7	chr3:135755200-135801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:135758200-135771200	Weak transcription	Stomach Mucosa	stomach
9	chr3:135761000-135802400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:135761600-135783400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:135762200-135772800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:135762200-135773000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:135762200-135774000	Weak transcription	Brain Angular Gyrus	brain
14	chr3:135762400-135771400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr3:135763000-135785600	Weak transcription	Brain Anterior Caudate	brain
16	chr3:135763200-135769400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:135763200-135770000	Strong transcription	Fetal Intestine Large	intestine
18	chr3:135763200-135772600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:135763200-135775000	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:135763200-135776800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:135763600-135775600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:135763800-135770000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:135764200-135768400	Weak transcription	Psoas Muscle	Psoas
24	chr3:135764400-135768000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:135764400-135771200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:135764400-135771200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:135764400-135790400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:135764600-135768000	Weak transcription	Adipose Nuclei	Adipose
29	chr3:135764600-135769200	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:135764600-135771000	Weak transcription	Lung	lung
31	chr3:135764600-135772200	Weak transcription	Colonic Mucosa	Colon
32	chr3:135764600-135773800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:135764600-135774400	Weak transcription	NHEK	skin
34	chr3:135764600-135778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:135764800-135769000	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:135764800-135769200	Weak transcription	Aorta	Aorta
37	chr3:135764800-135769200	Weak transcription	Left Ventricle	heart
38	chr3:135764800-135769600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:135764800-135775800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:135764800-135790400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:135765000-135768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:135765000-135769000	Weak transcription	Brain Germinal Matrix	brain
43	chr3:135765000-135769000	Weak transcription	Fetal Stomach	stomach
44	chr3:135765000-135769000	Weak transcription	Gastric	stomach
45	chr3:135765000-135769200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:135765000-135769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:135765000-135774200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:135765000-135776400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:135765000-135777800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:135765000-135781000	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links