Variant report

Variant	rs73863634
Chromosome Location	chr3:136321953-136321954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs55674785	1.00[EUR][1000 genomes]
rs56043110	1.00[EUR][1000 genomes]
rs56183552	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56381882	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58021491	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58206781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58493992	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58544452	1.00[EUR][1000 genomes]
rs59554065	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59778182	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60073313	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs61400878	1.00[EUR][1000 genomes]
rs6439666	1.00[EUR][1000 genomes]
rs6773054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72985268	1.00[EUR][1000 genomes]
rs73863618	1.00[EUR][1000 genomes]
rs73863622	1.00[EUR][1000 genomes]
rs73863623	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73863630	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863911	0.91[AMR][1000 genomes]
rs73863952	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635059	0.91[AMR][1000 genomes]
rs7640942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646127	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652657	1.00[EUR][1000 genomes]
rs9942116	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1794138	chr3:136300732-136332204	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136212200-136323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:136213000-136326600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:136247200-136334800	Weak transcription	Aorta	Aorta
4	chr3:136248200-136349200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:136251600-136322400	Weak transcription	Liver	Liver
6	chr3:136263000-136327200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:136268200-136351200	Weak transcription	Esophagus	oesophagus
8	chr3:136271200-136331400	Weak transcription	NHDF-Ad	bronchial
9	chr3:136272600-136335600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:136280000-136323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:136283800-136341800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:136284400-136337800	Weak transcription	Fetal Kidney	kidney
13	chr3:136285200-136335400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:136286800-136322600	Weak transcription	Placenta	Placenta
15	chr3:136286800-136343600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:136287200-136335400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:136289600-136341800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:136290000-136351600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:136297200-136345400	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:136297200-136351200	Weak transcription	Pancreas	Pancrea
21	chr3:136298600-136351600	Weak transcription	HSMM	muscle
22	chr3:136300000-136335400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:136300200-136351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:136304800-136331200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:136304800-136331400	Weak transcription	NHLF	lung
26	chr3:136305200-136339400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:136305800-136322200	Weak transcription	Hela-S3	cervix
28	chr3:136305800-136338000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:136305800-136343800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:136306000-136341400	Weak transcription	Stomach Mucosa	stomach
31	chr3:136306200-136327800	Weak transcription	Gastric	stomach
32	chr3:136306200-136341800	Weak transcription	Fetal Brain Female	brain
33	chr3:136306200-136343400	Weak transcription	HepG2	liver
34	chr3:136306800-136327000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:136308000-136327200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:136308000-136357400	Weak transcription	Lung	lung
37	chr3:136311000-136324000	Weak transcription	Brain Germinal Matrix	brain
38	chr3:136312200-136323000	Weak transcription	Primary B cells from cord blood	blood
39	chr3:136313400-136344000	Weak transcription	Fetal Heart	heart
40	chr3:136314000-136330000	Weak transcription	Spleen	Spleen
41	chr3:136314400-136324600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:136314400-136327800	Weak transcription	Left Ventricle	heart
43	chr3:136315000-136322800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:136315200-136323800	Weak transcription	HUVEC	blood vessel
45	chr3:136315200-136325200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:136315200-136326600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:136315200-136327200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:136315200-136343800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr3:136315400-136323000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:136315400-136324000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links