Variant report

Variant	rs7635059
Chromosome Location	chr3:136361404-136361405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136360867..136363380-chr3:136456006..136458080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240695	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56043110	0.82[AMR][1000 genomes]
rs56183552	0.91[AMR][1000 genomes]
rs58021491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58206781	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59554065	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773054	0.91[AMR][1000 genomes]
rs73863618	0.82[AMR][1000 genomes]
rs73863623	0.81[AFR][1000 genomes]
rs73863630	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863634	0.91[AMR][1000 genomes]
rs73863640	0.91[AMR][1000 genomes]
rs73863911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863952	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640942	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7646127	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9942116	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136316000-136364400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:136323400-136362000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:136324200-136363600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:136336200-136364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:136345800-136364000	Weak transcription	Small Intestine	intestine
6	chr3:136347200-136368400	Weak transcription	Fetal Intestine Small	intestine
7	chr3:136347400-136364000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:136347600-136367200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:136348200-136365000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:136348600-136364600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:136348800-136363800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:136348800-136373600	Weak transcription	Thymus	Thymus
13	chr3:136349800-136372400	Weak transcription	Dnd41	blood
14	chr3:136350600-136372200	Weak transcription	Primary T cells from cord blood	blood
15	chr3:136351600-136364600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:136351600-136364800	Weak transcription	Pancreas	Pancrea
17	chr3:136351600-136376200	Weak transcription	Esophagus	oesophagus
18	chr3:136351800-136364000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:136351800-136364600	Weak transcription	Right Ventricle	heart
20	chr3:136352000-136364000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:136352400-136361600	Weak transcription	Right Atrium	heart
22	chr3:136352400-136371600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:136352400-136371600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:136352400-136371800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:136354400-136364000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:136356000-136364600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:136356600-136364000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:136357800-136368200	Weak transcription	Lung	lung
29	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
30	chr3:136358200-136361600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:136358200-136363600	Weak transcription	Ovary	ovary
32	chr3:136358200-136363600	Weak transcription	Psoas Muscle	Psoas
33	chr3:136360200-136361800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr3:136360400-136362000	Enhancers	K562	blood
35	chr3:136361200-136361800	Enhancers	Left Ventricle	heart
36	chr3:136361400-136366200	Weak transcription	Fetal Stomach	stomach

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