Variant report

Variant	rs73863911
Chromosome Location	chr3:136387875-136387876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136380655..136383814-chr3:136385853..136389244,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56043110	0.82[AMR][1000 genomes]
rs56183552	0.91[AMR][1000 genomes]
rs57494495	1.00[EUR][1000 genomes]
rs58021491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58206781	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59554065	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773054	0.91[AMR][1000 genomes]
rs73863618	0.82[AMR][1000 genomes]
rs73863623	0.84[AFR][1000 genomes]
rs73863630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863634	0.91[AMR][1000 genomes]
rs73863640	0.91[AMR][1000 genomes]
rs73863952	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640942	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7646127	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9942116	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	esv3345328	chr3:136386312-136388260	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136365000-136396400	Weak transcription	Gastric	stomach
2	chr3:136374400-136390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:136374600-136389400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:136374800-136390000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:136375600-136390400	Weak transcription	Dnd41	blood
6	chr3:136376600-136392200	Weak transcription	Placenta	Placenta
7	chr3:136376800-136390400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:136377000-136389400	Weak transcription	NHEK	skin
9	chr3:136377000-136390400	Weak transcription	Right Ventricle	heart
10	chr3:136378600-136390400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:136378600-136390400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:136378600-136391400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:136378600-136393600	Weak transcription	Fetal Lung	lung
14	chr3:136378600-136394000	Weak transcription	Adipose Nuclei	Adipose
15	chr3:136378800-136390600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:136379200-136394000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:136379600-136391800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:136380800-136391600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:136381600-136390400	Weak transcription	Spleen	Spleen
20	chr3:136381600-136392400	Weak transcription	Small Intestine	intestine
21	chr3:136381800-136388800	Weak transcription	Fetal Stomach	stomach
22	chr3:136381800-136410800	Weak transcription	Psoas Muscle	Psoas
23	chr3:136382600-136394200	Weak transcription	Fetal Heart	heart
24	chr3:136383000-136390400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:136383000-136393200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:136383400-136394800	Weak transcription	Ovary	ovary
27	chr3:136383600-136391000	Weak transcription	HepG2	liver
28	chr3:136383600-136395800	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:136383800-136391400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:136383800-136391800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:136384000-136392400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:136384200-136390200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:136384200-136390600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:136384200-136390800	Weak transcription	HSMM	muscle
35	chr3:136384200-136391400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:136384200-136392000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:136384200-136392000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:136384200-136393200	Weak transcription	Brain Anterior Caudate	brain
39	chr3:136384200-136393800	Weak transcription	Brain Substantia Nigra	brain
40	chr3:136384400-136388200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:136384400-136391400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:136384400-136392000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:136385200-136392000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:136385200-136394000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr3:136385200-136398400	Weak transcription	Fetal Intestine Large	intestine
46	chr3:136385400-136392400	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:136385400-136393800	Weak transcription	Stomach Mucosa	stomach
48	chr3:136385600-136394000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:136386200-136393600	Weak transcription	NHLF	lung
50	chr3:136386400-136390200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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