Variant report

Variant	rs6773054
Chromosome Location	chr3:136445959-136445960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136445277..136447934-chr3:136453472..136456327,2	K562	blood:
2	chr3:136444891..136447189-chr3:136467226..136469420,2	K562	blood:

Variant related genes	Relation type
ENSG00000240695	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56183552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58021491	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58206781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59554065	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60073313	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs6439666	1.00[EUR][1000 genomes]
rs72985268	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73863630	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863911	0.91[AMR][1000 genomes]
rs73863952	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635059	0.91[AMR][1000 genomes]
rs7640942	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642679	1.00[EUR][1000 genomes]
rs7646127	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646723	0.83[MKK][hapmap]
rs7651059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652657	1.00[EUR][1000 genomes]
rs9942116	0.81[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136390800-136447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:136413400-136447200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:136413800-136447800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:136415200-136446000	Weak transcription	Thymus	Thymus
5	chr3:136415400-136447200	Weak transcription	NHDF-Ad	bronchial
6	chr3:136415400-136447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:136426600-136453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:136427800-136452400	Weak transcription	HUVEC	blood vessel
9	chr3:136429400-136447200	Weak transcription	Osteobl	bone
10	chr3:136431000-136454600	Weak transcription	Hela-S3	cervix
11	chr3:136432200-136447200	Weak transcription	Dnd41	blood
12	chr3:136432400-136447200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:136432400-136447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
15	chr3:136432600-136454000	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:136433200-136462600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:136437200-136447200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:136437200-136447400	Weak transcription	NHEK	skin
19	chr3:136438000-136458000	Weak transcription	Esophagus	oesophagus
20	chr3:136438400-136447000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:136438800-136461200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:136439200-136454400	Weak transcription	Fetal Stomach	stomach
23	chr3:136439400-136447400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:136440400-136447800	Weak transcription	Fetal Brain Male	brain
25	chr3:136441600-136447600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:136443600-136447200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:136443600-136448400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:136443600-136451400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:136443800-136452600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:136444000-136446200	Enhancers	Brain Anterior Caudate	brain
31	chr3:136444000-136446400	Enhancers	Colon Smooth Muscle	Colon
32	chr3:136444000-136446400	Enhancers	Fetal Heart	heart
33	chr3:136444000-136447200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:136444000-136448800	Enhancers	Primary T cells from cord blood	blood
35	chr3:136444000-136455000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr3:136444200-136446000	Enhancers	Brain Cingulate Gyrus	brain
37	chr3:136444200-136446200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr3:136444200-136446400	Enhancers	Brain Substantia Nigra	brain
39	chr3:136444200-136446600	Enhancers	Brain Angular Gyrus	brain
40	chr3:136444200-136447600	Weak transcription	HepG2	liver
41	chr3:136444200-136448200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:136444200-136455000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:136444400-136446200	Enhancers	Psoas Muscle	Psoas
44	chr3:136444400-136446600	Enhancers	Primary B cells from peripheral blood	blood
45	chr3:136444400-136447200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:136444400-136447200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:136444400-136447400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:136444400-136447400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:136444400-136447600	Weak transcription	Brain Germinal Matrix	brain
50	chr3:136444400-136451000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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