Variant report

Variant	rs7651059
Chromosome Location	chr3:136625154-136625155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59554065	1.00[EUR][1000 genomes]
rs60073313	1.00[EUR][1000 genomes]
rs6439666	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773054	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72985268	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73863952	1.00[EUR][1000 genomes]
rs7640942	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642679	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652657	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136609400-136625200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:136613200-136648800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:136613400-136625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:136613400-136626200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:136613600-136625200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:136613600-136625200	Weak transcription	Ovary	ovary
7	chr3:136613600-136625200	Weak transcription	Pancreas	Pancrea
8	chr3:136613600-136626200	Weak transcription	HMEC	breast
9	chr3:136613600-136633600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:136613600-136638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:136614000-136625200	Weak transcription	Gastric	stomach
12	chr3:136614000-136625200	Weak transcription	Spleen	Spleen
13	chr3:136618200-136625200	Weak transcription	Left Ventricle	heart
14	chr3:136618200-136625200	Weak transcription	Right Atrium	heart
15	chr3:136618600-136627200	Weak transcription	Small Intestine	intestine
16	chr3:136619200-136625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:136619200-136656800	Weak transcription	NHLF	lung
18	chr3:136620800-136625600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:136621000-136628000	Weak transcription	Hela-S3	cervix
20	chr3:136621600-136625600	Weak transcription	K562	blood
21	chr3:136621600-136625800	Weak transcription	HUVEC	blood vessel
22	chr3:136621800-136625400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:136622000-136625200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:136622000-136625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:136622200-136625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:136622200-136628000	Weak transcription	Liver	Liver
27	chr3:136622200-136633000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:136622400-136626600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:136623000-136626200	Weak transcription	Fetal Kidney	kidney
30	chr3:136623200-136631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:136623600-136625400	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:136623800-136626200	ZNF genes & repeats	Fetal Muscle Leg	muscle
33	chr3:136623800-136628000	Weak transcription	Brain Substantia Nigra	brain
34	chr3:136624000-136625800	Enhancers	Thymus	Thymus
35	chr3:136624000-136626400	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr3:136624000-136628600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:136624000-136630200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr3:136624200-136625400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:136624200-136625800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:136624200-136626600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:136624200-136626800	Enhancers	Primary T cells fromperipheralblood	blood
42	chr3:136624200-136630800	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
44	chr3:136624400-136625400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:136624400-136626600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr3:136624400-136630000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr3:136624400-136630400	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr3:136624600-136626200	Enhancers	Dnd41	blood
49	chr3:136624600-136626600	Genic enhancers	Fetal Thymus	thymus
50	chr3:136624600-136626600	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links