Variant report

Variant	rs60073313
Chromosome Location	chr3:136448877-136448878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136447920..136449484-chr3:136469466..136471753,2	K562	blood:
2	chr3:136447967..136449476-chr3:136469163..136470945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56183552	1.00[EUR][1000 genomes]
rs58021491	1.00[EUR][1000 genomes]
rs58206781	1.00[EUR][1000 genomes]
rs59554065	1.00[EUR][1000 genomes]
rs60778309	1.00[EUR][1000 genomes]
rs6439666	1.00[EUR][1000 genomes]
rs6773054	1.00[EUR][1000 genomes]
rs72985268	1.00[EUR][1000 genomes]
rs73863625	1.00[EUR][1000 genomes]
rs73863630	1.00[EUR][1000 genomes]
rs73863634	1.00[EUR][1000 genomes]
rs73863640	1.00[EUR][1000 genomes]
rs73863952	1.00[EUR][1000 genomes]
rs7640942	1.00[EUR][1000 genomes]
rs7642679	1.00[EUR][1000 genomes]
rs7646127	1.00[EUR][1000 genomes]
rs7651059	1.00[EUR][1000 genomes]
rs7652657	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136426600-136453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:136427800-136452400	Weak transcription	HUVEC	blood vessel
3	chr3:136431000-136454600	Weak transcription	Hela-S3	cervix
4	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
5	chr3:136432600-136454000	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:136433200-136462600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:136438000-136458000	Weak transcription	Esophagus	oesophagus
8	chr3:136438800-136461200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:136439200-136454400	Weak transcription	Fetal Stomach	stomach
10	chr3:136443600-136451400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:136443800-136452600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:136444000-136455000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:136444200-136455000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:136444400-136451000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:136444400-136451800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:136444600-136451200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:136444800-136450600	Enhancers	Small Intestine	intestine
18	chr3:136445200-136449200	Weak transcription	Fetal Intestine Small	intestine
19	chr3:136445200-136449400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:136445200-136449400	Weak transcription	A549	lung
21	chr3:136445200-136450000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:136445200-136453400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:136445400-136460000	Weak transcription	Gastric	stomach
24	chr3:136445800-136449200	Weak transcription	Stomach Mucosa	stomach
25	chr3:136445800-136449800	Weak transcription	Right Ventricle	heart
26	chr3:136446200-136449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:136446200-136449800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:136446200-136449800	Weak transcription	Psoas Muscle	Psoas
29	chr3:136446400-136453600	Weak transcription	Fetal Heart	heart
30	chr3:136446400-136460000	Weak transcription	K562	blood
31	chr3:136446600-136449600	Weak transcription	Thymus	Thymus
32	chr3:136446600-136450200	Weak transcription	Primary B cells from cord blood	blood
33	chr3:136446600-136451800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr3:136447200-136449200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:136447600-136450400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr3:136447800-136449000	Enhancers	Left Ventricle	heart
37	chr3:136447800-136449200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:136447800-136450800	Enhancers	Primary B cells from peripheral blood	blood
39	chr3:136447800-136451200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:136447800-136451600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr3:136448000-136449000	Weak transcription	Dnd41	blood
42	chr3:136448000-136449000	Weak transcription	HepG2	liver
43	chr3:136448000-136449200	Weak transcription	Liver	Liver
44	chr3:136448000-136449200	Weak transcription	HMEC	breast
45	chr3:136448000-136449400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:136448000-136449400	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:136448000-136449400	Weak transcription	Fetal Kidney	kidney
48	chr3:136448000-136449400	Weak transcription	Fetal Thymus	thymus
49	chr3:136448000-136449600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:136448000-136449600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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