Variant report
| Variant | rs61508594 |
|---|---|
| Chromosome Location | chr3:136478143-136478144 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:136476053..136479031-chr3:136579803..136582728,2 | K562 | blood: | |
| 2 | chr3:136472622..136474527-chr3:136477300..136478827,2 | K562 | blood: | |
| 3 | chr3:136477071..136478229-chr3:136732340..136733343,4 | MCF-7 | breast: | |
| 4 | chr3:136476088..136479031-chr3:136581100..136582728,2 | K562 | blood: | |
| 5 | chr3:136477513..136478380-chr3:136668652..136669180,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000158092 | Chromatin interaction |
| ENSG00000239213 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs28452147 | 0.86[ASN][1000 genomes] |
| rs34992220 | 0.88[ASN][1000 genomes] |
| rs55646943 | 0.88[EUR][1000 genomes] |
| rs61322732 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61790842 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6439656 | 0.92[ASN][1000 genomes] |
| rs6795227 | 0.92[ASN][1000 genomes] |
| rs73230097 | 0.88[EUR][1000 genomes] |
| rs9812541 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9813590 | 0.81[ASN][1000 genomes] |
| rs9833207 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9834574 | 0.84[EUR][1000 genomes] |
| rs9853960 | 0.91[ASN][1000 genomes] |
| rs9871160 | 0.83[ASN][1000 genomes] |
| rs9875034 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877529 | chr3:136364511-136487559 | ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006737 | chr3:136466188-136530743 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
